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    srt-42 7TM_GPCR_Srx domain-containing protein;Serpentine Receptor, class T [ Caenorhabditis elegans ]

    Gene ID: 189961, updated on 9-Dec-2024

    Summary

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    Official Symbol
    srt-42
    Official Full Name
    7TM_GPCR_Srx domain-containing protein;Serpentine Receptor, class T
    Primary source
    WormBase:WBGene00021599
    Locus tag
    CELE_Y46H3A.1
    See related
    AllianceGenome:WB:WBGene00021599
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See srt-42 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (1807460..1809582)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Heat shock protein hsp-16.2;SHSP domain-containing protein Neighboring gene Heat shock protein Hsp-16.41 Neighboring gene Cysteine-rich transmembrane CYSTM domain-containing protein;Lipoprotein;RadC domain-containing protein Neighboring gene Fungal lipase-like domain-containing protein Neighboring gene Polypeptide N-acetylgalactosaminyltransferase;Ricin B lectin domain-containing protein;putative N-acetylgalactosaminyltransferase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    7TM_GPCR_Srx domain-containing protein;Serpentine Receptor, class T
    NP_001024244.2
    • Confirmed by transcript evidence
    NP_001024245.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      1807460..1809582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029074.6 → NP_001024245.2  Serpentine Receptor, class T [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZZ8
      Conserved Domains (1) summary
      pfam10321
      Location:14 → 314
      7TM_GPCR_Srt; Serpentine type 7TM GPCR chemoreceptor Srt

    2. NM_001029073.2 → NP_001024244.2  7TM_GPCR_Srx domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N4W8
      Conserved Domains (1) summary
      pfam10321
      Location:3 → 61
      7TM_GPCR_Srt; Serpentine type 7TM GPCR chemoreceptor Srt
    Nucleotide Protein
    Heading Accession and Version

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