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    chts-1 EGF-like domain-containing protein;Peritrophic membrane chitin binding protein [ Caenorhabditis elegans ]

    Gene ID: 181010, updated on 9-Dec-2024

    Summary

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    Official Symbol
    chts-1
    Official Full Name
    EGF-like domain-containing protein;Peritrophic membrane chitin binding protein
    Primary source
    WormBase:WBGene00018607
    Locus tag
    CELE_F48E3.8
    See related
    AllianceGenome:WB:WBGene00018607
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in carbohydrate metabolic process. Located in endoplasmic reticulum. Is expressed in AIYL; AIYR; and somatic cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See chts-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    44
    Sequence:
    Chromosome: X; NC_003284.9 (7507877..7519669, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Neur_chan_LBD domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Ala Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pharyngeal polysaccharide deacetylases affect development in the nematode C. elegans and deacetylate chitin in vitro. Heustis RJ, et al. PLoS One, 2012. PMID 22808160, Free PMC Article
    2. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
    3. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    4. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    EGF-like domain-containing protein;Peritrophic membrane chitin binding protein
    NP_001360043.1
    • Partially confirmed by transcript evidence
    NP_001360044.1
    • Partially confirmed by transcript evidence
    NP_001360643.1
    • Partially confirmed by transcript evidence
    NP_001360754.1
    • Partially confirmed by transcript evidence
    NP_001360755.1
    • Partially confirmed by transcript evidence
    NP_001360756.1
    • Partially confirmed by transcript evidence
    NP_001391187.1
    • Confirmed by transcript evidence
    NP_001391188.1
    • Confirmed by transcript evidence
    NP_741841.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      7507877..7519669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373364.2 → NP_001360043.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WFH5
      Conserved Domains (2) summary
      pfam01683
      Location:300 → 351
      EB; EB module
      cl15692
      Location:1282 → 1544
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

    2. NM_001373362.3 → NP_001360044.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L041
      Conserved Domains (2) summary
      pfam01683
      Location:300 → 351
      EB; EB module
      cl15692
      Location:1241 → 1503
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

    3. NM_001373361.3 → NP_001360755.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0INQ1
      Conserved Domains (2) summary
      pfam01683
      Location:300 → 351
      EB; EB module
      cl15692
      Location:963 → 1225
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

    4. NM_001373360.2 → NP_001360643.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IK15
      Conserved Domains (2) summary
      pfam01683
      Location:476 → 527
      EB; EB module
      cl15692
      Location:1458 → 1720
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

    5. NM_001404202.1 → NP_001391188.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QDB1

    6. NM_001404203.1 → NP_001391187.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8S4QFG5

    7. NM_001373363.2 → NP_001360754.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IKX4
      Conserved Domains (2) summary
      pfam01683
      Location:300 → 351
      EB; EB module
      cl15692
      Location:1004 → 1266
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

    8. NM_171729.8 → NP_741841.2  Peritrophic membrane chitin binding protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741841.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L042
      Conserved Domains (1) summary
      cl15692
      Location:55 → 317
      CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily

    9. NM_001373365.4 → NP_001360756.1  EGF-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0INH8
      Conserved Domains (1) summary
      pfam01683
      Location:300 → 351
      EB; EB module
    Nucleotide Protein
    Heading Accession and Version

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