U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    haf-1 HAlF transporter (PGP related) [ Caenorhabditis elegans ]

    Gene ID: 178522, updated on 9-Dec-2024

    Summary

    Official Symbol
    haf-1
    Official Full Name
    HAlF transporter (PGP related)
    Primary source
    WormBase:WBGene00001811
    Locus tag
    CELE_C30H6.6
    See related
    AllianceGenome:WB:WBGene00001811
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables peptide transmembrane transporter activity. Involved in mitochondrial unfolded protein response; peptide transport; and protein import into mitochondrial matrix. Located in mitochondrial inner membrane. Orthologous to human ABCB10 (ATP binding cassette subfamily B member 10). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See haf-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (17376427..17379310)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Apple domain-containing protein Neighboring gene Altered inheritance of mitochondria protein 36, mitochondrial Neighboring gene 2-oxoacid dehydrogenase acyltransferase catalytic domain-containing protein Neighboring gene protein-disulfide reductase

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATPase-coupled transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables peptide transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial unfolded protein response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in peptide transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein import into mitochondrial matrix IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in response to chemical IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial inner membrane HDA PubMed 

    General protein information

    Preferred Names
    HAlF transporter (PGP related)
    NP_503098.2
    • Product from WormBase gene class haf;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      17376427..17379310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070697.7NP_503098.2  HAlF transporter (PGP related) [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503098.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45278
      Conserved Domains (3) summary
      COG1132
      Location:82641
      MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
      cl00549
      Location:93363
      ABC_membrane; ABC transporter transmembrane region
      cl21455
      Location:413641
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases