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    F53B1.8 Solute carrier organic anion transporter family member [ Caenorhabditis elegans ]

    Gene ID: 180528, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F53B1.8
    Official Full Name
    Solute carrier organic anion transporter family member
    Primary source
    WormBase:WBGene00018739
    Locus tag
    CELE_F53B1.8
    See related
    AllianceGenome:WB:WBGene00018739
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to be located in plasma membrane. Predicted to be active in basolateral plasma membrane. Orthologous to human SLCO4C1 (solute carrier organic anion transporter family member 4C1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F53B1.8 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    12
    Sequence:
    Chromosome: X; NC_003284.9 (2123413..2130241, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Metallo-beta-lactamase domain-containing protein 1 Neighboring gene Guanine nucleotide-binding protein alpha-5 subunit Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables sodium-independent organic anion transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sodium-independent organic anion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Solute carrier organic anion transporter family member
    NP_001294793.1
    • Confirmed by transcript evidence
    NP_001294794.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      2123413..2130241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001307864.4 → NP_001294793.1  Solute carrier organic anion transporter family member [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294793.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X5LPS1
      Conserved Domains (1) summary
      TIGR00805
      Location:72 → 763
      oat; sodium-independent organic anion transporter

    2. NM_001307865.3 → NP_001294794.1  Solute carrier organic anion transporter family member [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294794.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X5LX59
      Conserved Domains (1) summary
      TIGR00805
      Location:14 → 705
      oat; sodium-independent organic anion transporter
    Nucleotide Protein
    Heading Accession and Version

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