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    clec-86 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 183775, updated on 9-Dec-2024

    Summary

    Official Symbol
    clec-86
    Official Full Name
    C-type lectin domain-containing protein
    Primary source
    WormBase:WBGene00016912
    Locus tag
    CELE_C54D1.2
    See related
    AllianceGenome:WB:WBGene00016912
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Involved in innate immune response. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3G (regenerating family member 3 gamma). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See clec-86 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    3
    Sequence:
    Chromosome: X; NC_003284.9 (7139875..7140566)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene HEsitatioN behavior Neighboring gene IRS-type PTB domain-containing protein Neighboring gene ncRNA Neighboring gene Aldehyde dehydrogenase domain-containing protein Neighboring gene Laminin-like protein lam-2 Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables pattern recognition receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in innate immune response HEP PubMed 
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    C-type lectin domain-containing protein
    NP_509202.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      7139875..7140566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_076801.2NP_509202.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509202.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18821
      Conserved Domains (1) summary
      smart00034
      Location:20144
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)