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    • Showing Current items.

    col-53 Col_cuticle_N domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172222, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-53
    Official Full Name
    Col_cuticle_N domain-containing protein
    Primary source
    WormBase:WBGene00000630
    Locus tag
    CELE_M01A12.1
    See related
    AllianceGenome:WB:WBGene00000630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-53 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    6
    Sequence:
    Chromosome: I; NC_003279.8 (5644729..5646370)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase Neighboring gene Protein-tyrosine phosphatase catalytic domain-containing protein Neighboring gene ATP-dependent RNA helicase Neighboring gene Periodic tryptophan protein 2 homolog Neighboring gene CBF1-interacting co-repressor CIR N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Col_cuticle_N domain-containing protein
    NP_491651.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5644729..5646370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059250.8 → NP_491651.3  Col_cuticle_N domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491651.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      E5QCF2
      Conserved Domains (1) summary
      pfam01391
      Location:128 → 185
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein
    Heading Accession and Version

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