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    nstp-6 Nucleotide Sugar TransPorter family [ Caenorhabditis elegans ]

    Gene ID: 177116, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nstp-6
    Official Full Name
    Nucleotide Sugar TransPorter family
    Primary source
    WormBase:WBGene00015038
    Locus tag
    CELE_B0212.4
    See related
    AllianceGenome:WB:WBGene00015038
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable UDP-galactose transmembrane transporter activity. Predicted to be involved in UDP-galactose transmembrane transport. Predicted to be located in membrane. Predicted to be active in Golgi membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See nstp-6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    10
    Sequence:
    Chromosome: IV; NC_003282.8 (3543628..3547600, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene SPK domain-containing protein Neighboring gene SPK domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Pro Neighboring gene Ion transport domain-containing protein Neighboring gene ncRNA Neighboring gene Serpentine Receptor, class E (epsilon)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Lehner B, et al. Nat Genet, 2006 Aug. PMID 16845399
    2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables UDP-galactose transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables pyrimidine nucleotide-sugar transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in UDP-galactose transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nucleotide Sugar TransPorter family
    NP_001379547.1
    • Product from WormBase gene class nstp;
      Confirmed by transcript evidence
    NP_001380143.1
    • Product from WormBase gene class nstp;
      Confirmed by transcript evidence
    NP_500371.1
    • Product from WormBase gene class nstp;
      Confirmed by transcript evidence
    NP_741360.1
    • Product from WormBase gene class nstp;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      3543628..3547600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171306.4 → NP_741360.1  Nucleotide Sugar TransPorter family [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741360.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KY64, Q968A3
      Conserved Domains (2) summary
      pfam04142
      Location:35 → 332
      Nuc_sug_transp; Nucleotide-sugar transporter
      cl23754
      Location:109 → 320
      EamA; EamA-like transporter family

    2. NM_067970.3 → NP_500371.1  Nucleotide Sugar TransPorter family [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500371.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95X47, Q968A3
      Conserved Domains (2) summary
      pfam04142
      Location:36 → 333
      Nuc_sug_transp; Nucleotide-sugar transporter
      cl23754
      Location:110 → 321
      EamA; EamA-like transporter family

    3. NM_001392281.1 → NP_001379547.1  Nucleotide Sugar TransPorter family [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5TKB1, Q968A3
      Conserved Domains (1) summary
      pfam04142
      Location:1 → 263
      Nuc_sug_transp; Nucleotide-sugar transporter

    4. NM_001392282.1 → NP_001380143.1  Nucleotide Sugar TransPorter family [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PBV2
      Conserved Domains (1) summary
      pfam04142
      Location:1 → 65
      Nuc_sug_transp; Nucleotide-sugar transporter
    Nucleotide Protein
    Heading Accession and Version

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