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    xtr-2 MX region of TRA-2 Related [ Caenorhabditis elegans ]

    Gene ID: 192058, updated on 9-Dec-2024

    Summary

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    Official Symbol
    xtr-2
    Official Full Name
    MX region of TRA-2 Related
    Primary source
    WormBase:WBGene00006966
    Locus tag
    CELE_F17A2.1
    See related
    AllianceGenome:WB:WBGene00006966
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See xtr-2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Sequence:
    Chromosome: X; NC_003284.9 (12315568..12318184)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Histone deacetylase 14 Neighboring gene pseudo Neighboring gene Homeobox protein ceh-40 Neighboring gene Uncharacterized protein Neighboring gene Serpentine receptor class delta-40 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Germ-line regulation of the Caenorhabditis elegans sex-determining gene tra-2. Kuwabara PE, et al. Dev Biol, 1998 Dec 1. PMID 9851857
    2. Cell-Specific mRNA Profiling of the Caenorhabditis elegans Somatic Gonadal Precursor Cells Identifies Suites of Sex-Biased and Gonad-Enriched Transcripts. Kroetz MB, et al. G3 (Bethesda), 2015 Oct 23. PMID 26497144, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in hermaphrodite germ-line sex determination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in hermaphrodite somatic sex determination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    MX region of TRA-2 Related
    NP_001309688.1
    • Product from WormBase gene class xtr;
      Confirmed by transcript evidence
    NP_510059.2
    • Product from WormBase gene class xtr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      12315568..12318184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077658.4 → NP_510059.2  MX region of TRA-2 Related [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MBZ9
      Conserved Domains (1) summary
      pfam04050
      Location:185 → 226
      Upf2; Up-frameshift suppressor 2

    2. NM_001322636.1 → NP_001309688.1  MX region of TRA-2 Related [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A131MD22
      Conserved Domains (1) summary
      pfam04050
      Location:150 → 191
      Upf2; Up-frameshift suppressor 2
    Nucleotide Protein
    Heading Accession and Version

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