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    daf-42 Mucin-5AC;Prion-like-(Q/N-rich)-domain-bearing protein;Proline-rich protein 36-like [ Caenorhabditis elegans ]

    Gene ID: 177507, updated on 9-Dec-2024

    Summary

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    Official Symbol
    daf-42
    Official Full Name
    Mucin-5AC;Prion-like-(Q/N-rich)-domain-bearing protein;Proline-rich protein 36-like
    Primary source
    WormBase:WBGene00021496
    Locus tag
    CELE_Y40C5A.3
    See related
    AllianceGenome:WB:WBGene00021496
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in cuticle and hypodermis. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See daf-42 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    24
    Sequence:
    Chromosome: IV; NC_003282.8 (7333638..7346851, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ion transport domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Trp Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. daf-42 is an evolutionarily young gene essential for dauer development in Caenorhabditis elegans. Lim DS, et al. Genetics, 2023 Aug 9. PMID 37216205
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Mucin-5AC;Prion-like-(Q/N-rich)-domain-bearing protein;Proline-rich protein 36-like
    NP_001255292.2
    • Partially confirmed by transcript evidence
    NP_001255293.2
    • Partially confirmed by transcript evidence
    NP_001294177.1
    • Confirmed by transcript evidence
    NP_001294178.1
    • Confirmed by transcript evidence
    NP_001294179.1
    • Partially confirmed by transcript evidence
    NP_001294180.1
    • Partially confirmed by transcript evidence
    NP_001294181.1
    • Partially confirmed by transcript evidence
    NP_001294182.1
    • Partially confirmed by transcript evidence
    NP_001294183.1
    • Partially confirmed by transcript evidence
    NP_001294184.1
    • Partially confirmed by transcript evidence
    NP_001294185.1
    • Partially confirmed by transcript evidence
    NP_001294186.1
    • Partially confirmed by transcript evidence
    NP_001294187.1
    • Partially confirmed by transcript evidence
    NP_001294188.1
    • Partially confirmed by transcript evidence
    NP_001294189.1
    • Partially confirmed by transcript evidence
    NP_001294190.1
    • Partially confirmed by transcript evidence
    NP_001294191.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7333638..7346851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001307249.1 → NP_001294178.1  Prion-like-(Q/N-rich)-domain-bearing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294178.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6SBF1
      Conserved Domains (1) summary
      PHA03247
      Location:204 → 678
      PHA03247; large tegument protein UL36; Provisional

    2. NM_001307248.1 → NP_001294177.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294177.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RTK4
      Conserved Domains (1) summary
      PHA03247
      Location:397 → 880
      PHA03247; large tegument protein UL36; Provisional

    3. NM_001307250.1 → NP_001294179.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294179.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RR12
      Conserved Domains (1) summary
      PHA03247
      Location:413 → 971
      PHA03247; large tegument protein UL36; Provisional

    4. NM_001268363.2 → NP_001255292.2  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255292.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L029
      Conserved Domains (2) summary
      PRK13335
      Location:1317 → 1468
      PRK13335; superantigen-like protein; Reviewed
      PHA03247
      Location:413 → 963
      PHA03247; large tegument protein UL36; Provisional

    5. NM_001307255.1 → NP_001294184.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294184.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RR15
      Conserved Domains (3) summary
      PRK13335
      Location:1317 → 1468
      PRK13335; superantigen-like protein; Reviewed
      PHA03247
      Location:413 → 963
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:1731 → 2066
      PRK10263; DNA translocase FtsK; Provisional

    6. NM_001307252.1 → NP_001294181.1  Proline-rich protein 36-like [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294181.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RRZ4
      Conserved Domains (2) summary
      PHA03247
      Location:235 → 785
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:1553 → 1888
      PRK10263; DNA translocase FtsK; Provisional

    7. NM_001307254.1 → NP_001294183.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294183.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6SBG0
      Conserved Domains (1) summary
      PRK10263
      Location:477 → 812
      PRK10263; DNA translocase FtsK; Provisional

    8. NM_001307259.1 → NP_001294188.1  Prion-like-(Q/N-rich)-domain-bearing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294188.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6SBH5
      Conserved Domains (2) summary
      PHA03308
      Location:377 → 497
      PHA03308; transcriptional regulator ICP4; Provisional
      PRK12323
      Location:446 → 651
      PRK12323; DNA polymerase III subunits gamma and tau; Provisional

    9. NM_001307262.1 → NP_001294191.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294191.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RS00
      Conserved Domains (1) summary
      PHA03247
      Location:444 → 952
      PHA03247; large tegument protein UL36; Provisional

    10. NM_001307256.1 → NP_001294185.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294185.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RY65
      Conserved Domains (2) summary
      PHA03247
      Location:460 → 1005
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:854 → 1176
      PRK10263; DNA translocase FtsK; Provisional

    11. NM_001307251.1 → NP_001294180.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294180.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RY60
      Conserved Domains (1) summary
      PHA03247
      Location:460 → 1018
      PHA03247; large tegument protein UL36; Provisional

    12. NM_001307253.1 → NP_001294182.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294182.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RTK8
      Conserved Domains (2) summary
      PHA03247
      Location:460 → 1018
      PHA03247; large tegument protein UL36; Provisional
      TIGR00600
      Location:995 → 1199
      rad2; DNA excision repair protein (rad2)

    13. NM_001307260.1 → NP_001294189.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294189.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RR18
      Conserved Domains (1) summary
      PHA03247
      Location:460 → 1018
      PHA03247; large tegument protein UL36; Provisional

    14. NM_001307261.1 → NP_001294190.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294190.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RY69
      Conserved Domains (1) summary
      PHA03247
      Location:460 → 1018
      PHA03247; large tegument protein UL36; Provisional

    15. NM_001307257.1 → NP_001294186.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294186.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RRZ7
      Conserved Domains (2) summary
      PHA03247
      Location:460 → 1018
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:854 → 1189
      PRK10263; DNA translocase FtsK; Provisional

    16. NM_001268364.2 → NP_001255293.2  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255293.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      D0G914
      Conserved Domains (2) summary
      PRK13335
      Location:1364 → 1521
      PRK13335; superantigen-like protein; Reviewed
      PHA03247
      Location:460 → 1010
      PHA03247; large tegument protein UL36; Provisional

    17. NM_001307258.1 → NP_001294187.1  Mucin-5AC [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294187.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      W6RTL3
      Conserved Domains (3) summary
      PRK13335
      Location:1364 → 1515
      PRK13335; superantigen-like protein; Reviewed
      PHA03247
      Location:460 → 1010
      PHA03247; large tegument protein UL36; Provisional
      PRK10263
      Location:1778 → 2113
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein
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