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    lgc-35 Gamma-aminobutyric acid receptor subunit beta [ Caenorhabditis elegans ]

    Gene ID: 189960, updated on 9-Dec-2024

    Summary

    Official Symbol
    lgc-35
    Official Full Name
    Gamma-aminobutyric acid receptor subunit beta
    Primary source
    WormBase:WBGene00012915
    Locus tag
    CELE_Y46G5A.26
    See related
    AllianceGenome:WB:WBGene00012915
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and neurotransmitter receptor activity. Predicted to contribute to chloride channel activity. Predicted to be involved in chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to be located in membrane. Predicted to be part of transmembrane transporter complex. Predicted to be active in neuron projection; plasma membrane; and synapse. Is expressed in head mesodermal cell; neurons; non-striated muscle; and in male. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See lgc-35 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    13
    Sequence:
    Chromosome: II; NC_003280.10 (12836480..12840157, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Beta,beta-carotene 9',10'-oxygenase Neighboring gene pseudo Neighboring gene Patterned expression site protein 10 Neighboring gene MI domain-containing protein

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables GABA-A receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    contributes_to chloride channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables extracellular ligand-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transmembrane signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in chloride transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of GABA-A receptor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Gamma-aminobutyric acid receptor subunit beta
    NP_001022438.1
    • Confirmed by transcript evidence
    NP_001379306.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      12836480..12840157 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001027267.5NP_001022438.1  Gamma-aminobutyric acid receptor subunit beta [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001022438.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U2E2
      Conserved Domains (3) summary
      TIGR00860
      Location:83491
      LIC; Cation transporter family protein
      pfam02931
      Location:84283
      Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
      pfam02932
      Location:293370
      Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
    2. NM_001393216.1NP_001379306.1  Gamma-aminobutyric acid receptor subunit beta [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MPP4