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    F33E11.3 Protein phosphatase 1 regulatory subunit 21 N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178556, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F33E11.3
    Official Full Name
    Protein phosphatase 1 regulatory subunit 21 N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00018011
    Locus tag
    CELE_F33E11.3
    See related
    AllianceGenome:WB:WBGene00018011
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in early endosome. Orthologous to human PPP1R21 (protein phosphatase 1 regulatory subunit 21). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F33E11.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (300021..304713, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene 'chromo' domain containing protein;Mediator complex subunit 6 Neighboring gene PHD finger protein 10;PHD-type domain-containing protein Neighboring gene Nuclear Hormone Receptor family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    2. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    3. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in early endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein phosphatase 1 regulatory subunit 21 N-terminal domain-containing protein
    NP_503171.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      300021..304713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070770.7 → NP_503171.1  Protein phosphatase 1 regulatory subunit 21 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503171.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61853
      Conserved Domains (2) summary
      pfam10205
      Location:17 → 90
      KLRAQ; Predicted coiled-coil domain-containing protein
      pfam10212
      Location:225 → 632
      TTKRSYEDQ; Predicted coiled-coil domain-containing protein
    Nucleotide Protein
    Heading Accession and Version

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