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    clc-6 Clc-like protein [ Caenorhabditis elegans ]

    Gene ID: 179548, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clc-6
    Official Full Name
    Clc-like protein
    Primary source
    WormBase:WBGene00010742
    Locus tag
    CELE_K10D6.2
    See related
    AllianceGenome:WB:WBGene00010742
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in ciliated neurons and hypodermis. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clc-6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (11193730..11196209, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ligand-Gated ion Channel Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Clc-like protein
    NP_001359762.1
    • Confirmed by transcript evidence
    NP_001366943.1
    • Confirmed by transcript evidence
    NP_001369942.1
    • Confirmed by transcript evidence
    NP_505843.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      11193730..11196209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001380762.2 → NP_001366943.1  Clc-like protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NAP4
      Conserved Domains (1) summary
      pfam07062
      Location:8 → 219
      Clc-like

    2. NM_001383401.1 → NP_001369942.1  Clc-like protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45669
      Conserved Domains (1) summary
      pfam07062
      Location:8 → 219
      Clc-like

    3. NM_073442.4 → NP_505843.2  Clc-like protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_505843.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45670
      Conserved Domains (1) summary
      pfam07062
      Location:8 → 219
      Clc-like; Clc-like

    4. NM_001373109.3 → NP_001359762.1  Clc-like protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      E9P878
      Conserved Domains (1) summary
      pfam07062
      Location:8 → 219
      Clc-like
    Nucleotide Protein
    Heading Accession and Version

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