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    abf-5 AntiBacterial Factor related [ Caenorhabditis elegans ]

    Gene ID: 188770, updated on 18-Sep-2024

    Summary

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    Official Symbol
    abf-5
    Official Full Name
    AntiBacterial Factor related
    Primary source
    WormBase:WBGene00000016
    Locus tag
    CELE_T22H6.5
    See related
    AllianceGenome:WB:WBGene00000016
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See abf-5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    2
    Sequence:
    Chromosome: X; NC_003284.9 (12792854..12793386)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Nuclear hormone receptor family member nhr-27 Neighboring gene Seven TM Receptor Neighboring gene Seven TM Receptor Neighboring gene AntiBacterial Factor related Neighboring gene HMG box domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ASABF, a novel cysteine-rich antibacterial peptide isolated from the nematode Ascaris suum. Purification, primary structure, and molecular cloning of cDNA. Kato Y, et al. J Biol Chem, 1996 Nov 29. PMID 8940016
    2. Paralysis of nematodes: shifts in the transcriptome of the nematode-trapping fungus Monacrosporium haptotylum during infection of Caenorhabditis elegans. Fekete C, et al. Environ Microbiol, 2008 Feb. PMID 18028414
    3. Caenorhabditis elegans: a model genetic host to study Pseudomonas aeruginosa pathogenesis. Tan MW, et al. Curr Opin Microbiol, 2000 Feb. PMID 10679415
    4. Caenorhabditis elegans as a model for innate immunity to pathogens. Gravato-Nobre MJ, et al. Cell Microbiol, 2005 Jun. PMID 15888078
    5. Responses to infection and possible recognition strategies in the innate immune system of Caenorhabditis elegans. Nicholas HR, et al. Mol Immunol, 2004 Jul. PMID 15183927

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    AntiBacterial Factor related
    NP_510136.1
    • Product from WormBase gene class abf;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      12792854..12793386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077735.6 → NP_510136.1  AntiBacterial Factor related [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510136.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EFQ2
    Nucleotide Protein
    Heading Accession and Version

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