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    npp-7 RanBP2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172234, updated on 9-Dec-2024

    Summary

    Official Symbol
    npp-7
    Official Full Name
    RanBP2-type domain-containing protein
    Primary source
    WormBase:WBGene00003793
    Locus tag
    CELE_T19B4.2
    See related
    AllianceGenome:WB:WBGene00003793
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Involved in several processes, including determination of adult lifespan; nucleus organization; and regulation of exit from mitosis. Located in nuclear membrane. Part of nuclear pore. Orthologous to human POM121 (POM121 transmembrane nucleoporin) and POM121C (POM121 transmembrane nucleoporin C). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See npp-7 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    7
    Sequence:
    Chromosome: I; NC_003279.8 (5692264..5697500)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Mitochondrial import inner membrane translocase subunit TIM14 Neighboring gene Adenine phosphoribosyltransferase;adenine phosphoribosyltransferase Neighboring gene Netrin receptor unc-40 Neighboring gene putative peptidylglycine alpha-hydroxylating monooxygenase Neighboring gene ncRNA Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nuclear localization sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in determination of adult lifespan IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in determination of adult lifespan IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in embryo development ending in birth or egg hatching IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nucleus organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of exit from mitosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    RanBP2-type domain-containing protein
    NP_001370374.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      5692264..5697500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383135.2NP_001370374.1  RanBP2-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      P91457
      Conserved Domains (2) summary
      smart00547
      Location:673696
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:674693
      zf-RanBP2; RanBP2-type Zn finger [structural motif]