rbm-39 RRM domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: rbm-39
Official Full Name: RRM domain-containing protein
Primary source: WormBase:WBGene00021921
Locus tag: CELE_Y55F3AM.3
See related: AllianceGenome:WB:WBGene00021921
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable chromatin DNA binding activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in nucleus. Is expressed in neurons; pharynx; and tail. Orthologous to several human genes including RBM39 (RNA binding motif protein 39). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See rbm-39 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 8

Sequence:: Chromosome: IV; NC_003282.8 (1012624..1019558)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y55F3A_746.a (e-PCR)
- UniSTS:324430

Y55F3A_746.f (e-PCR)
- UniSTS:323977

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables chromatin DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA processing	IEA Inferred from Electronic Annotation more info
involved_in nuclear envelope organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RRM domain-containing protein

NP_001380075.1

Confirmed by transcript evidence

NP_500025.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

1012624..1019558

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001392253.1 → NP_001380075.1 RRM domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q8MXS6

Conserved Domains (1) summary

TIGR01622
Location:5 → 370

SF-CC1; splicing factor, CC1-like family
NM_067624.5 → NP_500025.1 RRM domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_500025.1

Status: REVIEWED

UniProtKB/TrEMBL

Q9N368

Conserved Domains (4) summary

cd12283
Location:171 → 243

RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

cd12285
Location:421 → 505

RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

pfam15519
Location:367 → 438

RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein

cl17169
Location:276 → 345

RRM_SF; RNA recognition motif (RRM) superfamily