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    • Showing Current items.

    rol-8 Cuticle collagen 6 [ Caenorhabditis elegans ]

    Gene ID: 174226, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rol-8
    Official Full Name
    Cuticle collagen 6
    Primary source
    WormBase:WBGene00004398
    Locus tag
    CELE_ZK1290.3
    See related
    AllianceGenome:WB:WBGene00004398
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rol-8 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (7544108..7545335)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene MARVEL domain-containing protein Neighboring gene Nuclear factor I family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box A protein 224

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distinct transcriptomic responses of Caenorhabditis elegans to pristine and sulfidized silver nanoparticles. Starnes DL, et al. Environ Pollut, 2016 Jun. PMID 26925754
    2. Genes that can be mutated to unmask hidden antigenic determinants in the cuticle of the nematode Caenorhabditis elegans. Politz SM, et al. Proc Natl Acad Sci U S A, 1990 Apr. PMID 1691498, Free PMC Article
    3. Cuticle chirality and body handedness in Caenorhabditis elegans. Bergmann DC, et al. Dev Genet, 1998. PMID 9842711
    4. Sequence comparisons of developmentally regulated collagen genes of Caenorhabditis elegans. Cox GN, et al. Gene, 1989. PMID 2753356
    5. Domain organization and intron positions in Caenorhabditis elegans collagen genes: the 54-bp module hypothesis revisited. Fields C. J Mol Evol, 1988 Dec-1989 Feb. PMID 3148742

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen 6
    NP_495582.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7544108..7545335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063181.7 → NP_495582.1  Cuticle collagen 6 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495582.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P18831, Q23437
      Conserved Domains (1) summary
      pfam01484
      Location:30 → 66
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P18831.2

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