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    wrt-5 Warthog protein 5 [ Caenorhabditis elegans ]

    Gene ID: 177162, updated on 9-Dec-2024

    Summary

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    Official Symbol
    wrt-5
    Official Full Name
    Warthog protein 5
    Primary source
    WormBase:WBGene00006951
    Locus tag
    CELE_W03D2.5
    See related
    AllianceGenome:WB:WBGene00006951
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable signaling receptor binding activity. Predicted to be involved in cell communication. Predicted to be located in extracellular region. Is expressed in epithelial cell; excretory system; hermaphrodite gonad; and pharyngeal-intestinal valve. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See wrt-5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (4050006..4051639, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Cell division cycle protein 73 Neighboring gene Proliferating cell nuclear antigen Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The hedgehog-related gene wrt-5 is essential for hypodermal development in Caenorhabditis elegans. Hao L, et al. Dev Biol, 2006 Feb 15. PMID 16413526
    2. Warthog and groundhog, novel families related to hedgehog. Bürglin TR. Curr Biol, 1996 Sep 1. PMID 8805384
    3. Homologs of the Hh signalling network in C. elegans. Bürglin TR, et al. WormBook, 2006 Jan 28. PMID 18050469, Free PMC Article
    4. The homeodomain protein PAL-1 specifies a lineage-specific regulatory network in the C. elegans embryo. Baugh LR, et al. Development, 2005 Apr. PMID 15772128
    5. Caenorhabditis elegans has scores of hedgehog-related genes: sequence and expression analysis. Aspöck G, et al. Genome Res, 1999 Oct. PMID 10523520

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables signaling receptor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell communication ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Warthog protein 5
    NP_001040994.1
    • Confirmed by transcript evidence
    NP_001040995.1
    • Confirmed by transcript evidence
    NP_001294406.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      4050006..4051639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047529.4 → NP_001040994.1  Warthog protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040994.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O02116, Q1RS88, Q9U7D3

    2. NM_001307477.3 → NP_001294406.1  Warthog protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294406.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PM52

    3. NM_001047530.4 → NP_001040995.1  Warthog protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040995.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9U7D3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9U7D3.2

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