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    era-1 Embryonic mRna (mRNA) Anterior [ Caenorhabditis elegans ]

    Gene ID: 179061, updated on 9-Dec-2024

    Summary

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    Official Symbol
    era-1
    Official Full Name
    Embryonic mRna (mRNA) Anterior
    Primary source
    WormBase:WBGene00020948
    Locus tag
    CELE_W02F12.3
    See related
    AllianceGenome:WB:WBGene00020948
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in cell cortex. Is expressed in several structures, including AB; AB lineage cell; ABa; P0; and germ line. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See era-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (6703057..6704573)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Alkaline ceramidase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Exonuclease domain-containing protein Neighboring gene Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polarity-dependent asymmetric distribution and MEX-5/6-mediated translational activation of the Era-1 mRNA in C. elegans embryos. Spiró Z, et al. PLoS One, 2015. PMID 25821955, Free PMC Article
    2. Microtubule severing by the katanin complex is activated by PPFR-1-dependent MEI-1 dephosphorylation. Gomes JE, et al. J Cell Biol, 2013 Aug 5. PMID 23918937, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cell cortex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Embryonic mRna (mRNA) Anterior
    NP_504698.1
    • Product from WormBase gene class era;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6703057..6704573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072297.6 → NP_504698.1  Embryonic mRna (mRNA) Anterior [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504698.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45146
      Conserved Domains (1) summary
      PHA03307
      Location:40 → 318
      PHA03307; transcriptional regulator ICP4; Provisional
    Nucleotide Protein
    Heading Accession and Version

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