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    R04E5.8 ATP-dependent RNA helicase RhlE;JmjC domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181127, updated on 9-Dec-2024

    Summary

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    Official Symbol
    R04E5.8
    Official Full Name
    ATP-dependent RNA helicase RhlE;JmjC domain-containing protein
    Primary source
    WormBase:WBGene00019871
    Locus tag
    CELE_R04E5.8
    See related
    AllianceGenome:WB:WBGene00019871
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable microtubule binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See R04E5.8 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (8801558..8806120, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Cholesterol uptake protein 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Metal transporter cnnm-2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase RhlE;JmjC domain-containing protein
    NP_001024832.1
    • Confirmed by transcript evidence
    NP_001361959.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      8801558..8806120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029661.6 → NP_001024832.1  JmjC domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024832.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9GYL4
      Conserved Domains (1) summary
      PRK12678
      Location:739 → 975
      PRK12678; transcription termination factor Rho; Provisional

    2. NM_001375091.2 → NP_001361959.1  ATP-dependent RNA helicase RhlE [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86DC5
      Conserved Domains (1) summary
      PRK12678
      Location:8 → 137
      PRK12678; transcription termination factor Rho; Provisional
    Nucleotide Protein
    Heading Accession and Version

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