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    1700037C18Rik RIKEN cDNA 1700037C18 gene [ Mus musculus (house mouse) ]

    Gene ID: 73261, updated on 9-Dec-2024

    Summary

    Official Symbol
    1700037C18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700037C18 geneprovided by MGI
    Primary source
    MGI:MGI:1920511
    See related
    Ensembl:ENSMUSG00000005983 AllianceGenome:MGI:1920511
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810022L20Rik
    Summary
    Is expressed in ductus deferens; epididymis; ileum; and testis. Orthologous to human C16orf90 (chromosome 16 open reading frame 90). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 67.8) and kidney adult (RPKM 3.6) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See 1700037C18Rik in Genome Data Viewer
    Location:
    16 A1; 16 2.29 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (3723662..3726553, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (3905798..3908689, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5522 Neighboring gene olfactory receptor family 2 subfamily C member 1 Neighboring gene zinc finger protein 174 Neighboring gene zinc finger protein 597 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3872304-3872526 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3872697-3872880 Neighboring gene N(alpha)-acetyltransferase 60, NatF catalytic subunit Neighboring gene STARR-positive B cell enhancer mm9_chr16:3884448-3884748 Neighboring gene predicted gene, 41410 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3908535-3908837 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3909019-3909128 Neighboring gene clusterin associated protein 1 Neighboring gene prothymosin alpha-like Neighboring gene predicted gene 15539

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C16orf90 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028484.2NP_082760.2  uncharacterized protein C16orf90 homolog

      See identical proteins and their annotated locations for NP_082760.2

      Status: VALIDATED

      Source sequence(s)
      AK012792, AK161085, CR517846
      Consensus CDS
      CCDS49746.1
      UniProtKB/Swiss-Prot
      B9EJK2, Q8BT88, Q9D9P5
      UniProtKB/TrEMBL
      H3BLF4
      Related
      ENSMUSP00000111525.2, ENSMUST00000115859.8
      Conserved Domains (1) summary
      pfam15486
      Location:2162
      DUF4644; Domain of unknown function (DUF4644)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      3723662..3726553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)