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    Natd1 N-acetyltransferase domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 24083, updated on 27-Nov-2024

    Summary

    Official Symbol
    Natd1provided by MGI
    Official Full Name
    N-acetyltransferase domain containing 1provided by MGI
    Primary source
    MGI:MGI:1344388
    See related
    Ensembl:ENSMUSG00000018931 AllianceGenome:MGI:1344388
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    F3-2; Gtlf3b; Gm16515
    Summary
    Is expressed in pancreas; skeleton; telencephalon meninges; testis; and trunk mesenchyme. Orthologous to human NATD1 (N-acetyltransferase domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in ovary adult (RPKM 27.2), mammary gland adult (RPKM 23.1) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Natd1 in Genome Data Viewer
    Location:
    11 B2; 11 37.93 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (60793072..60804618, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (60902246..60913792, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 11 Neighboring gene STARR-positive B cell enhancer ABC_E10679 Neighboring gene STARR-seq mESC enhancer starr_29661 Neighboring gene predicted gene, 26534 Neighboring gene predicted gene, 39830 Neighboring gene STARR-seq mESC enhancer starr_29662 Neighboring gene mitogen-activated protein kinase kinase 3, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E2993 Neighboring gene mitogen-activated protein kinase kinase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2) 

    General protein information

    Preferred Names
    protein NATD1
    Names
    N-acetyltransferase domain-containing protein 1
    gene trap locus F3b
    gene trap locus protein F3-2
    gene trap locus protein F3b
    protein GTLF3B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025294.5NP_079570.1  protein NATD1

      See identical proteins and their annotated locations for NP_079570.1

      Status: VALIDATED

      Source sequence(s)
      AK004720, AK080453, BY196792
      Consensus CDS
      CCDS24802.1
      UniProtKB/Swiss-Prot
      Q9DBW3
      Related
      ENSMUSP00000019075.4, ENSMUST00000019075.4
      Conserved Domains (1) summary
      pfam14542
      Location:26100
      Acetyltransf_CG; GCN5-related N-acetyl-transferase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      60793072..60804618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)