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    Nxph3 neurexophilin 3 [ Mus musculus (house mouse) ]

    Gene ID: 104079, updated on 27-Nov-2024

    Summary

    Official Symbol
    Nxph3provided by MGI
    Official Full Name
    neurexophilin 3provided by MGI
    Primary source
    MGI:MGI:1336188
    See related
    Ensembl:ENSMUSG00000046719 AllianceGenome:MGI:1336188
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables signaling receptor binding activity. Predicted to be located in extracellular region. Is expressed in genitourinary system and telencephalon. Orthologous to human NXPH3 (neurexophilin 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E18 (RPKM 6.7), cortex adult (RPKM 5.6) and 17 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Nxph3 in Genome Data Viewer
    Location:
    11 D; 11 59.01 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (95400671..95405380, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (95509845..95514565, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10708 Neighboring gene speckle-type BTB/POZ protein Neighboring gene predicted gene, 53646 Neighboring gene STARR-positive B cell enhancer ABC_E9841 Neighboring gene nerve growth factor receptor (TNFR superfamily, member 16) Neighboring gene STARR-seq mESC enhancer starr_30513 Neighboring gene STARR-positive B cell enhancer ABC_E304 Neighboring gene prohibitin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (3)  1 citation

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_130858.4NP_570928.1  neurexophilin-3 precursor

      See identical proteins and their annotated locations for NP_570928.1

      Status: VALIDATED

      Source sequence(s)
      AL662875
      Consensus CDS
      CCDS25278.1
      UniProtKB/Swiss-Prot
      Q91VX5
      UniProtKB/TrEMBL
      Q544G3
      Related
      ENSMUSP00000058254.8, ENSMUST00000058866.8
      Conserved Domains (1) summary
      pfam06312
      Location:59252
      Neurexophilin; Neurexophilin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      95400671..95405380 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531933.5XP_006531996.1  neurexophilin-3 isoform X1

      Conserved Domains (1) summary
      pfam06312
      Location:84277
      Neurexophilin