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    Fhitos fragile histidine triad gene, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 547334, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Fhitosprovided by MGI
    Official Full Name
    fragile histidine triad gene, opposite strandprovided by MGI
    Primary source
    MGI:MGI:4414962
    See related
    Ensembl:ENSMUSG00000089833 AllianceGenome:MGI:4414962
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm16542
    Expression
    Restricted expression toward testis adult (RPKM 2.5) See more
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    Genomic context

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    See Fhitos in Genome Data Viewer
    Location:
    14 A1; 14 6.33 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (11690772..11731220, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (10738553..10779001)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35914 Neighboring gene ribosomal protein L21, pseudogene 4 Neighboring gene Slc25a5 retrotransposed pseudogene Neighboring gene STARR-seq mESC enhancer starr_35913 Neighboring gene STARR-seq mESC enhancer starr_35912 Neighboring gene fragile histidine triad gene Neighboring gene STARR-seq mESC enhancer starr_35911 Neighboring gene STARR-seq mESC enhancer starr_35910 Neighboring gene STARR-seq mESC enhancer starr_35909 Neighboring gene STARR-seq mESC enhancer starr_35908 Neighboring gene STARR-seq mESC enhancer starr_35907 Neighboring gene STARR-seq mESC enhancer starr_35906 Neighboring gene STARR-seq mESC enhancer starr_35905 Neighboring gene STARR-seq mESC enhancer starr_35903 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:11285795-11286069 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:11285582-11285691 Neighboring gene predicted gene, 22053 Neighboring gene STARR-seq mESC enhancer starr_35900 Neighboring gene STARR-seq mESC enhancer starr_35899 Neighboring gene STARR-seq mESC enhancer starr_35898 Neighboring gene STARR-seq mESC enhancer starr_35897 Neighboring gene STARR-seq mESC enhancer starr_35896 Neighboring gene Mnd1 retrotransposed pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131139.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154197
      Related
      ENSMUST00000160149.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      11690772..11731220 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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