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    Stc1 stanniocalcin 1 [ Mus musculus (house mouse) ]

    Gene ID: 20855, updated on 9-Dec-2024

    Summary

    Official Symbol
    Stc1provided by MGI
    Official Full Name
    stanniocalcin 1provided by MGI
    Primary source
    MGI:MGI:109131
    See related
    Ensembl:ENSMUSG00000014813 AllianceGenome:MGI:109131
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Stc
    Summary
    Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including chondrocyte proliferation; endothelial cell morphogenesis; and regulation of monoatomic ion transport. Predicted to act upstream of with a positive effect on negative regulation of cell migration. Predicted to act upstream of or within intracellular monoatomic anion homeostasis. Located in extracellular space. Is expressed in several structures, including alimentary system; genitourinary system; limb; musculoskeletal system; and nervous system. Orthologous to human STC1 (stanniocalcin 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in bladder adult (RPKM 6.1), ovary adult (RPKM 5.7) and 14 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Stc1 in Genome Data Viewer
    Location:
    14 D2; 14 35.98 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (69266738..69278850)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (69029289..69041401)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31281 Neighboring gene ATP synthase subunit g, mitochondrial pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E1169 Neighboring gene STARR-seq mESC enhancer starr_37051 Neighboring gene predicted gene, 41192 Neighboring gene STARR-seq mESC enhancer starr_37052 Neighboring gene STARR-seq mESC enhancer starr_37053 Neighboring gene RIKEN cDNA 1700092C10 gene Neighboring gene ribosomal protein S2, pseudogene 5 Neighboring gene NK2 homeobox 6

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (1)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hormone activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in bone development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to cAMP IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to glucocorticoid stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to hypoxia IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in chondrocyte proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in chondrocyte proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in decidualization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in embryo implantation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in endothelial cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in endothelial cell morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in growth plate cartilage axis specification IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in growth plate cartilage axis specification ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in intracellular calcium ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within intracellular calcium ion homeostasis TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within intracellular monoatomic anion homeostasis TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in negative regulation of calcium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_positive_effect negative regulation of cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of endothelial cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of endothelial cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of renal phosphate excretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of renal phosphate excretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in ossification IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in ossification ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of calcium ion import IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of calcium ion import ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cardiac muscle cell contraction IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of cardiac muscle cell contraction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of monoatomic anion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to vitamin D IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    stanniocalcin-1
    Names
    STC-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009285.3NP_033311.3  stanniocalcin-1 precursor

      See identical proteins and their annotated locations for NP_033311.3

      Status: VALIDATED

      Source sequence(s)
      AK134260, AK149293, BB551439
      Consensus CDS
      CCDS27236.1
      UniProtKB/Swiss-Prot
      O55183
      UniProtKB/TrEMBL
      Q3UYZ1, Q71UE3
      Related
      ENSMUSP00000014957.9, ENSMUST00000014957.10
      Conserved Domains (1) summary
      pfam03298
      Location:6206
      Stanniocalcin; Stanniocalcin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      69266738..69278850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)