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    DDX39B DExD-box helicase 39B [ Bos taurus (domestic cattle) ]

    Gene ID: 540191, updated on 30-Jan-2025

    Summary

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    Official Symbol
    DDX39Bprovided by VGNC
    Official Full Name
    DExD-box helicase 39Bprovided by VGNC
    Primary source
    VGNC:VGNC:27965
    See related
    EnsemblRapid:ENSBTAG00070014716
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    BAT1
    Orthologs
    human mouse all
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    Genomic context

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    See DDX39B in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (27748193..27758989)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor like 1 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene mitochondrial coiled-coil domain 1 Neighboring gene uncharacterized protein MGC126945 Neighboring gene uncharacterized LOC132343674

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127051

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spliceosome RNA helicase DDX39B
    Names
    56 kDa U2AF65-associated protein
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
    DEAD box protein UAP56
    DEAD-box helicase 39B
    DEADD box protein
    HLA-B associated transcript 1
    spliceosome RNA helicase BAT1
    NP_001028801.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033629.2 → NP_001028801.1  spliceosome RNA helicase DDX39B

      See identical proteins and their annotated locations for NP_001028801.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102131
      UniProtKB/Swiss-Prot
      Q3T147
      UniProtKB/TrEMBL
      A0AAF6ZA24
      Related
      ENSBTAP00070019604.1, ENSBTAT00070033267.1
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27748193..27758989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T147.1 GenPept UniProtKB/Swiss-Prot:Q3T147

    Gene LinkOut

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