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    TEFM transcription elongation factor, mitochondrial [ Bos taurus (domestic cattle) ]

    Gene ID: 534204, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TEFMprovided by VGNC
    Official Full Name
    transcription elongation factor, mitochondrialprovided by VGNC
    Primary source
    VGNC:VGNC:50118
    See related
    BGD:BT14251; Ensembl:ENSBTAG00000018386
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C19H17orf42
    Orthologs
    human mouse all
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    Genomic context

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    See TEFM in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (18052315..18059809)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 135 Neighboring gene ArfGAP with dual PH domains 2 Neighboring gene ATPase family AAA domain containing 5 Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene cytokine receptor like factor 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA polymerase processivity factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by mitochondrial RNA polymerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168010.2 → NP_001161482.2  transcription elongation factor, mitochondrial

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000019
      UniProtKB/Swiss-Prot
      A6QPR9
      Related
      ENSBTAP00000024467.7, ENSBTAT00000024467.7
      Conserved Domains (1) summary
      pfam12836
      Location:77 → 119
      HHH_3; Helix-hairpin-helix motif

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      18052315..18059809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QPR9.2 GenPept UniProtKB/Swiss-Prot:A6QPR9

    Gene LinkOut

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