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    TPD52L1 TPD52 like 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 534629, updated on 30-Jan-2025

    Summary

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    Official Symbol
    TPD52L1provided by VGNC
    Official Full Name
    TPD52 like 1provided by VGNC
    Primary source
    VGNC:VGNC:36245
    See related
    BGD:BT14550; EnsemblRapid:ENSBTAG00070026812
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TPD52L1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (25985760..26078941, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346208 Neighboring gene HD domain containing 2 Neighboring gene microRNA mir-2477 Neighboring gene uncharacterized LOC112448125 Neighboring gene uncharacterized LOC112448020

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor protein D53
    Names
    tumor protein D52 like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076033.1 → NP_001069501.1  tumor protein D53

      See identical proteins and their annotated locations for NP_001069501.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120446
      UniProtKB/TrEMBL
      A0A3Q1LLK0, Q0VBY4
      Related
      ENSBTAP00070036198.1, ENSBTAT00070060831.1
      Conserved Domains (1) summary
      pfam04201
      Location:12 → 192
      TPD52; Tumour protein D52 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25985760..26078941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005210717.5 → XP_005210774.1  tumor protein D53 isoform X5

      UniProtKB/TrEMBL
      A0AAA9TI57, A0AAA9U095
      Related
      ENSBTAP00070036231.1, ENSBTAT00070060877.1
      Conserved Domains (1) summary
      pfam04201
      Location:12 → 129
      TPD52; tumor protein D52 family

    2. XM_005210715.5 → XP_005210772.1  tumor protein D53 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LLK0, A0AAA9T557
      Related
      ENSBTAP00070036215.1, ENSBTAT00070060855.1
      Conserved Domains (1) summary
      pfam04201
      Location:12 → 174
      TPD52; tumor protein D52 family

    3. XM_005210714.5 → XP_005210771.1  tumor protein D53 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LLK0, F6Q4U5
      Related
      ENSBTAP00070036206.1, ENSBTAT00070060844.1
      Conserved Domains (1) summary
      pfam04201
      Location:12 → 187
      TPD52; tumor protein D52 family

    4. XM_010808393.2 → XP_010806695.1  tumor protein D53 isoform X4

      See identical proteins and their annotated locations for XP_010806695.1

      UniProtKB/TrEMBL
      A0A3Q1LLK0
      Conserved Domains (1) summary
      pfam04201
      Location:15 → 163
      TPD52; Tumour protein D52 family

    5. XM_024996740.2 → XP_024852508.1  tumor protein D53 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LLK0
      Conserved Domains (1) summary
      pfam04201
      Location:9 → 189
      TPD52; tumor protein D52 family

    6. XM_059889773.1 → XP_059745756.1  tumor protein D53 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LLK0
    Nucleotide Protein Strain
    Heading Accession and Version

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