U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CNBP CCHC-type zinc finger nucleic acid binding protein [ Bos taurus (domestic cattle) ]

    Gene ID: 504831, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CNBPprovided by VGNC
    Official Full Name
    CCHC-type zinc finger nucleic acid binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:27492
    See related
    BGD:BT29244; Ensembl:ENSBTAG00000012159
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CNBP in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (59070493..59080203, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene RAB43, member RAS oncogene family Neighboring gene ISY1 splicing factor homolog Neighboring gene uncharacterized LOC112443509 Neighboring gene uncharacterized LOC101904705 Neighboring gene COPI coat complex subunit gamma 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC127608

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CCHC-type zinc finger nucleic acid binding protein
    Names
    cellular nucleic acid-binding protein
    zinc finger protein 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034224.2 → NP_001029396.1  CCHC-type zinc finger nucleic acid binding protein

      See identical proteins and their annotated locations for NP_001029396.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102298
      UniProtKB/Swiss-Prot
      Q3T0Q6
      Conserved Domains (1) summary
      PTZ00368
      Location:47 → 164
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      59070493..59080203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024982452.2 → XP_024838220.1  CCHC-type zinc finger nucleic acid binding protein isoform X3

      Conserved Domains (1) summary
      PTZ00368
      Location:44 → 161
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    2. XM_024982449.2 → XP_024838217.1  CCHC-type zinc finger nucleic acid binding protein isoform X1

      UniProtKB/TrEMBL
      A0AAF6YXD6
      Related
      ENSBTAP00000016130.6, ENSBTAT00000016130.7
      Conserved Domains (1) summary
      PTZ00368
      Location:54 → 171
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    3. XM_024982451.2 → XP_024838219.1  CCHC-type zinc finger nucleic acid binding protein isoform X2

      UniProtKB/Swiss-Prot
      Q3T0Q6
      Conserved Domains (1) summary
      PTZ00368
      Location:47 → 164
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    4. XM_024982450.2 → XP_024838218.1  CCHC-type zinc finger nucleic acid binding protein isoform X1

      UniProtKB/TrEMBL
      A0AAF6YXD6
      Conserved Domains (1) summary
      PTZ00368
      Location:54 → 171
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T0Q6.1 GenPept UniProtKB/Swiss-Prot:Q3T0Q6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials