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    CFDP1 craniofacial development protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 281682, updated on 1-Jan-2025

    Summary

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    Gene symbol
    CFDP1
    Gene description
    craniofacial development protein 1
    See related
    BGD:BT12284
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    Bcnt/Cfdp1
    Orthologs
    human mouse all
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    Genomic context

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    See CFDP1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (2623336..2727409, complement)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene chymotrypsinogen B1 Neighboring gene BCAR1 scaffold protein, Cas family member Neighboring gene large ribosomal subunit protein eL34-like Neighboring gene uncharacterized LOC101903645 Neighboring gene craniofacial development protein 2 Neighboring gene bucentaur-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A transposable element-mediated gene divergence that directly produces a novel type bovine Bcnt protein including the endonuclease domain of RTE-1. Iwashita S, et al. Mol Biol Evol, 2003 Sep. PMID 12832649
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of Swr1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    craniofacial development protein 1
    Names
    bucentaur
    h-type BCNT protein
    human-type Bcnt

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174268.1 → NP_776693.1  craniofacial development protein 1

      See identical proteins and their annotated locations for NP_776693.1

      Status: PROVISIONAL

      Source sequence(s)
      AB081004
      UniProtKB/Swiss-Prot
      Q2KIY4, Q8HXY9, Q8I031, Q8I033
      Conserved Domains (1) summary
      pfam07572
      Location:220 → 293
      BCNT; Bucentaur or craniofacial development

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      2623336..2727409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024977945.2 → XP_024833713.1  craniofacial development protein 1 isoform X1

      UniProtKB/TrEMBL
      S6CGB4
      Conserved Domains (1) summary
      pfam07572
      Location:180 → 253
      BCNT; Bucentaur or craniofacial development
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8HXY9.1 GenPept UniProtKB/Swiss-Prot:Q8HXY9

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