U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    MED13L mediator complex subunit 13L [ Bos taurus (domestic cattle) ]

    Gene ID: 517336, updated on 1-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    MED13Lprovided by VGNC
    Official Full Name
    mediator complex subunit 13Lprovided by VGNC
    Primary source
    VGNC:VGNC:31351
    See related
    BGD:BT23826; Ensembl:ENSBTAG00000001888
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MED13L in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (58611028..58894005)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112442044 Neighboring gene uncharacterized LOC112442005 Neighboring gene uncharacterized LOC132342625 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene uncharacterized LOC104974661 Neighboring gene uncharacterized LOC132342626

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    mediator of RNA polymerase II transcription subunit 13-like
    Names
    mediator complex subunit 13 like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192468.2 → NP_001179397.1  mediator of RNA polymerase II transcription subunit 13-like isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000017
      UniProtKB/TrEMBL
      A0AAA9T6T6, A0AAA9TW26
      Related
      ENSBTAP00000092461.1, ENSBTAT00000102528.1
      Conserved Domains (2) summary
      pfam06333
      Location:1677 → 2196
      Med13_C; Mediator complex subunit 13 C-terminal
      pfam11597
      Location:16 → 385
      Med13_N; Mediator complex subunit 13 N-terminal

    2. NM_001369918.1 → NP_001356847.1  mediator of RNA polymerase II transcription subunit 13-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000017
      UniProtKB/TrEMBL
      A0AAA9TW26
      Related
      ENSBTAP00000100813.1, ENSBTAT00000108546.1
      Conserved Domains (2) summary
      pfam11597
      Location:57 → 385
      Med13_N; Mediator complex subunit 13 N-terminal
      pfam06333
      Location:1676 → 2195
      Med13_C; Mediator complex subunit 13 C-terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      58611028..58894005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876003.1 → XP_059731986.1  mediator of RNA polymerase II transcription subunit 13-like isoform X1

      UniProtKB/TrEMBL
      A0AAA9S394
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials