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    MTMR1 myotubularin related protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 541155, updated on 1-Jan-2025

    Summary

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    Official Symbol
    MTMR1provided by VGNC
    Official Full Name
    myotubularin related protein 1provided by VGNC
    Primary source
    VGNC:VGNC:31736
    See related
    BGD:BT28381; Ensembl:ENSBTAG00000009657
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See MTMR1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (33366147..33427115)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene mastermind like domain containing 1 Neighboring gene myotubularin 1 Neighboring gene CD99 molecule like 2 Neighboring gene high mobility group box 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol-3-phosphate phosphatase MTMR1
    NP_001192996.1
    XP_005227657.1
    XP_005227659.1
    XP_005227661.1
    XP_059739500.1
    XP_059739501.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206067.1 → NP_001192996.1  phosphatidylinositol-3-phosphate phosphatase MTMR1

      See identical proteins and their annotated locations for NP_001192996.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000030
      UniProtKB/TrEMBL
      A0A3Q1MG01, A0AAA9SLC8
      Related
      ENSBTAP00000073162.1, ENSBTAT00000076351.1
      Conserved Domains (2) summary
      cd13358
      Location:110 → 209
      PH-GRAM_MTMR1; Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:216 → 551
      Myotub-related; Myotubularin-like phosphatase domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33366147..33427115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227600.5 → XP_005227657.1  phosphatidylinositol-3-phosphate phosphatase MTMR1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SLC8
      Conserved Domains (2) summary
      cd13358
      Location:127 → 226
      PH-GRAM_MTMR1; Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:233 → 568
      Myotub-related; Myotubularin-like phosphatase domain

    2. XM_005227602.5 → XP_005227659.1  phosphatidylinositol-3-phosphate phosphatase MTMR1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LW08, A0AAA9SLC8
      Related
      ENSBTAP00000064866.1, ENSBTAT00000079516.2
      Conserved Domains (2) summary
      cd13358
      Location:118 → 217
      PH-GRAM_MTMR1; Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:224 → 559
      Myotub-related; Myotubularin-like phosphatase domain

    3. XM_059883517.1 → XP_059739500.1  phosphatidylinositol-3-phosphate phosphatase MTMR1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SLC8, E1BFE6
      Related
      ENSBTAP00000012726.4, ENSBTAT00000012726.6

    4. XM_059883518.1 → XP_059739501.1  phosphatidylinositol-3-phosphate phosphatase MTMR1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9T0I4

    5. XM_005227604.5 → XP_005227661.1  phosphatidylinositol-3-phosphate phosphatase MTMR1 isoform X5

      UniProtKB/TrEMBL
      A0AAA9T9B2
      Conserved Domains (2) summary
      cd13358
      Location:13 → 112
      PH-GRAM_MTMR1; Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:135 → 455
      Myotub-related; Myotubularin-like phosphatase domain
    Nucleotide Protein Strain
    Heading Accession and Version

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