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    TRMT6 tRNA methyltransferase 6 non-catalytic subunit [ Bos taurus (domestic cattle) ]

    Gene ID: 505816, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TRMT6provided by VGNC
    Official Full Name
    tRNA methyltransferase 6 non-catalytic subunitprovided by VGNC
    Primary source
    VGNC:VGNC:36374
    See related
    BGD:BT20698; Ensembl:ENSBTAG00000001314
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TRMT6 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (48107140..48120755, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene shieldin complex subunit 1 Neighboring gene chromogranin B Neighboring gene uncharacterized LOC112449307 Neighboring gene minichromosome maintenance 8 homologous recombination repair factor Neighboring gene cardiolipin synthase 1 Neighboring gene leucine rich repeat neuronal 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134456

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of tRNA (m1A) methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
    Names
    mRNA methyladenosine-N(1)-methyltransferase non-catalytic subunit TRM6
    tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6
    tRNA methyltransferase 6 homolog
    tRNA(m1A58)-methyltransferase subunit TRM6
    tRNA(m1A58)MTase subunit TRM6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038040.2 → NP_001033129.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

      See identical proteins and their annotated locations for NP_001033129.1

      Status: PROVISIONAL

      Source sequence(s)
      BC111249
      UniProtKB/Swiss-Prot
      Q2T9V5
      UniProtKB/TrEMBL
      A0AAF6YIK1
      Related
      ENSBTAP00000001734.4, ENSBTAT00000001734.5
      Conserved Domains (1) summary
      pfam04189
      Location:20 → 287
      Gcd10p; Gcd10p family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      48107140..48120755 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005214564.5 → XP_005214621.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform X1

      See identical proteins and their annotated locations for XP_005214621.1

      Conserved Domains (1) summary
      pfam04189
      Location:9 → 213
      Gcd10p; Gcd10p family

    2. XM_010811391.4 → XP_010809693.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform X2

      Conserved Domains (1) summary
      pfam04189
      Location:2 → 131
      Gcd10p; Gcd10p family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2T9V5.1 GenPept UniProtKB/Swiss-Prot:Q2T9V5

    Gene LinkOut

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