U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RFXANK regulatory factor X associated ankyrin containing protein [ Bos taurus (domestic cattle) ]

    Gene ID: 100125917, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    RFXANKprovided by VGNC
    Official Full Name
    regulatory factor X associated ankyrin containing proteinprovided by VGNC
    Primary source
    VGNC:VGNC:33900
    See related
    BGD:BT17040; EnsemblRapid:ENSBTAG00070005939
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RFXANK in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (4059612..4065493, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene hyaluronan and proteoglycan link protein 4 Neighboring gene uncharacterized LOC112447628 Neighboring gene neurocan Neighboring gene LOC100271850-MEF2B readthrough transcript Neighboring gene nuclear receptor 2C2 associated protein Neighboring gene BLOC-1 related complex subunit 8 Neighboring gene myocyte enhancer factor 2B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC139634

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding protein RFXANK

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001434953.1 → NP_001421882.1  DNA-binding protein RFXANK isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000007

    RNA

    1. NR_198877.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      NKLS02000007
      Related
      ENSBTAT00070013590.1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4059612..4065493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010806518.4 → XP_010804820.1  DNA-binding protein RFXANK isoform X2

      See identical proteins and their annotated locations for XP_010804820.1

      UniProtKB/TrEMBL
      A0A3Q1MI09
      Related
      ENSBTAP00070007901.1, ENSBTAT00070013615.1
      Conserved Domains (4) summary
      cd00204
      Location:93 → 209
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:93 → 186
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:174 → 210
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:122 → 153
      ANK; ANK repeat [structural motif]

    2. XM_005208416.5 → XP_005208473.1  DNA-binding protein RFXANK isoform X3

      See identical proteins and their annotated locations for XP_005208473.1

      UniProtKB/TrEMBL
      A0AAA9T9L4
      Related
      ENSBTAP00070007896.1, ENSBTAT00070013608.1
      Conserved Domains (2) summary
      cd00204
      Location:118 → 238
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:123 → 154
      ANK; ANK repeat [structural motif]

    3. XM_010806516.4 → XP_010804818.1  DNA-binding protein RFXANK isoform X1

      See identical proteins and their annotated locations for XP_010804818.1

      Conserved Domains (2) summary
      cd00204
      Location:94 → 210
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:123 → 154
      ANK; ANK repeat [structural motif]

    4. XM_005208417.2 → XP_005208474.1  DNA-binding protein RFXANK isoform X4

      UniProtKB/TrEMBL
      A0AAA9T9L4, E1B9I7
      Related
      ENSBTAP00070007892.1, ENSBTAT00070013602.1
      Conserved Domains (2) summary
      cd00204
      Location:117 → 237
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:122 → 153
      ANK; ANK repeat [structural motif]

    5. XM_010806517.4 → XP_010804819.1  DNA-binding protein RFXANK isoform X2

      See identical proteins and their annotated locations for XP_010804819.1

      UniProtKB/TrEMBL
      A0A3Q1MI09
      Conserved Domains (4) summary
      cd00204
      Location:93 → 209
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:93 → 186
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:174 → 210
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:122 → 153
      ANK; ANK repeat [structural motif]

    6. XM_010806515.4 → XP_010804817.1  DNA-binding protein RFXANK isoform X1

      See identical proteins and their annotated locations for XP_010804817.1

      Conserved Domains (2) summary
      cd00204
      Location:94 → 210
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:123 → 154
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials