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    RAD23A RAD23 homolog A, nucleotide excision repair protein [ Bos taurus (domestic cattle) ]

    Gene ID: 540564, updated on 27-Dec-2024

    Summary

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    Official Symbol
    RAD23Aprovided by VGNC
    Official Full Name
    RAD23 homolog A, nucleotide excision repair proteinprovided by VGNC
    Primary source
    VGNC:VGNC:33682
    See related
    BGD:BT28507; Ensembl:ENSBTAG00000015116
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RAD23A in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (12610347..12616422, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene DAN domain BMP antagonist family member 5 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene GADD45G interacting protein 1 Neighboring gene calreticulin Neighboring gene phenylalanyl-tRNA synthetase subunit alpha

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140027

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UV excision repair protein RAD23 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082614.1 → NP_001076083.1  UV excision repair protein RAD23 homolog A

      See identical proteins and their annotated locations for NP_001076083.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133282
      UniProtKB/Swiss-Prot
      A3KMV2
      UniProtKB/TrEMBL
      A0AAA9TAW9
      Related
      ENSBTAP00000095866.1, ENSBTAT00000134773.1
      Conserved Domains (5) summary
      cd01805
      Location:3 → 80
      RAD23_N; Ubiquitin-like domain of RAD23
      cd14377
      Location:162 → 201
      UBA1_Rad23; UBA1 domain of Rad23 proteins found in metazoa
      cd14427
      Location:318 → 358
      UBA2_HR23A; UBA2 domain of UV excision repair protein RAD23 homolog A (HR23A) found in vertebrates
      TIGR00601
      Location:3 → 360
      rad23; UV excision repair protein Rad23
      pfam09280
      Location:231 → 286
      XPC-binding; XPC-binding domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      12610347..12616422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005208675.3 → XP_005208732.1  UV excision repair protein RAD23 homolog A isoform X1

      See identical proteins and their annotated locations for XP_005208732.1

      UniProtKB/TrEMBL
      A0AAA9TAW9, A0AAF6Z0Y9
      Related
      ENSBTAP00000020113.5, ENSBTAT00000020113.6
      Conserved Domains (5) summary
      cd01805
      Location:3 → 80
      RAD23_N; Ubiquitin-like domain of RAD23
      cd14377
      Location:162 → 201
      UBA1_Rad23; UBA1 domain of Rad23 proteins found in metazoa
      cd14427
      Location:319 → 359
      UBA2_HR23A; UBA2 domain of UV excision repair protein RAD23 homolog A (HR23A) found in vertebrates
      TIGR00601
      Location:3 → 361
      rad23; UV excision repair protein Rad23
      pfam09280
      Location:232 → 287
      XPC-binding; XPC-binding domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3KMV2.1 GenPept UniProtKB/Swiss-Prot:A3KMV2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.