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    SEC22B SEC22 homolog B, vesicle trafficking protein [ Bos taurus (domestic cattle) ]

    Gene ID: 614775, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SEC22Bprovided by VGNC
    Official Full Name
    SEC22 homolog B, vesicle trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:59190
    See related
    BGD:BT19205; Ensembl:ENSBTAG00000007712
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SEC22B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (23075087..23100481)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene phosphodiesterase 4D interacting protein Neighboring gene notch receptor 2 Neighboring gene ubiquitin-conjugating enzyme E2 D3-like Neighboring gene disintegrin and metalloproteinase domain-containing protein 30

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC127664

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion with Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle-trafficking protein SEC22b
    Names
    vesicle-trafficking protein SEC22b-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076343.2 → NP_001069811.1  vesicle-trafficking protein SEC22b precursor

      See identical proteins and their annotated locations for NP_001069811.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102342
      UniProtKB/TrEMBL
      A0A3Q1MMA1, Q3T0L9
      Related
      ENSBTAP00000010141.5, ENSBTAT00000010141.6
      Conserved Domains (3) summary
      COG5143
      Location:10 → 188
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
      cd15866
      Location:132 → 195
      R-SNARE_SEC22; SNARE motif of SEC22
      pfam13774
      Location:37 → 103
      Longin; Regulated-SNARE-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      23075087..23100481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005204048.5 → XP_005204105.1  vesicle-trafficking protein SEC22b isoform X1

      See identical proteins and their annotated locations for XP_005204105.1

      UniProtKB/TrEMBL
      A0A3Q1MMA1, A0AAA9TYV1
      Related
      ENSBTAP00000103517.1, ENSBTAT00000119718.1
      Conserved Domains (2) summary
      cd15866
      Location:132 → 195
      R-SNARE_SEC22; SNARE motif of SEC22
      cd14824
      Location:3 → 126
      Longin; longin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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