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    VMP1 vacuole membrane protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 508631, updated on 27-Dec-2024

    Summary

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    Official Symbol
    VMP1provided by VGNC
    Official Full Name
    vacuole membrane protein 1provided by VGNC
    Primary source
    VGNC:VGNC:36806
    See related
    Ensembl:ENSBTAG00000011623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    MIR21; TMEM49
    Orthologs
    human mouse all
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    Genomic context

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    See VMP1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (10674163..10802805)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene DEAH-box helicase 40 Neighboring gene clathrin heavy chain Neighboring gene peptidyl-tRNA hydrolase 2 Neighboring gene microRNA mir-21 Neighboring gene tubulin delta 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140672

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuole membrane protein 1
    Names
    transmembrane protein 49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075368.2 → NP_001068836.1  vacuole membrane protein 1

      See identical proteins and their annotated locations for NP_001068836.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120116
      UniProtKB/Swiss-Prot
      Q0VCK9
      UniProtKB/TrEMBL
      A0AAF7AAA9
      Related
      ENSBTAP00000015439.3, ENSBTAT00000015439.4
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      10674163..10802805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059877873.1 → XP_059733856.1  vacuole membrane protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q0VCK9
      UniProtKB/TrEMBL
      A0AAF7AAA9

    2. XM_005219886.5 → XP_005219943.1  vacuole membrane protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005219943.1

      UniProtKB/Swiss-Prot
      Q0VCK9
      UniProtKB/TrEMBL
      A0AAF7AAA9
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    3. XM_005219885.5 → XP_005219942.1  vacuole membrane protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005219942.1

      UniProtKB/Swiss-Prot
      Q0VCK9
      UniProtKB/TrEMBL
      A0AAF7AAA9
      Conserved Domains (1) summary
      cl00429
      Location:247 → 298
      SNARE_assoc; SNARE associated Golgi protein

    4. XM_024979873.2 → XP_024835641.1  vacuole membrane protein 1 isoform X2

      Conserved Domains (1) summary
      cl00429
      Location:117 → 168
      SNARE_assoc; SNARE associated Golgi protein

    RNA

    1. XR_009491511.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VCK9.1 GenPept UniProtKB/Swiss-Prot:Q0VCK9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.