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    C29H11orf54 chromosome 29 C11orf54 homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 530784, updated on 27-Dec-2024

    Summary

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    Official Symbol
    C29H11orf54provided by VGNC
    Official Full Name
    chromosome 29 C11orf54 homologprovided by VGNC
    Primary source
    VGNC:VGNC:52699
    See related
    BGD:BT15455; Ensembl:ENSBTAG00000003550
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C11orf54
    Orthologs
    human mouse all
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    Genomic context

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    See C29H11orf54 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (1056365..1080650, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene V-set and transmembrane domain containing 5 Neighboring gene mediator complex subunit 17 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I subunit D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC128152

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ester hydrolase C11orf54 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046315.2 → NP_001039780.1  ester hydrolase C11orf54 homolog

      See identical proteins and their annotated locations for NP_001039780.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105390
      UniProtKB/Swiss-Prot
      Q2HJH3
      UniProtKB/TrEMBL
      A0AAA9T6I1
      Related
      ENSBTAP00000004617.5, ENSBTAT00000004617.7
      Conserved Domains (1) summary
      pfam08925
      Location:21 → 303
      DUF1907; Domain of Unknown Function (DUF1907)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1056365..1080650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005226644.5 → XP_005226701.1  ester hydrolase C11orf54 homolog isoform X1

      See identical proteins and their annotated locations for XP_005226701.1

      UniProtKB/Swiss-Prot
      Q2HJH3
      UniProtKB/TrEMBL
      A0AAA9T6I1
      Conserved Domains (1) summary
      pfam08925
      Location:21 → 303
      DUF1907; Domain of Unknown Function (DUF1907)

    2. XM_005226643.5 → XP_005226700.1  ester hydrolase C11orf54 homolog isoform X1

      See identical proteins and their annotated locations for XP_005226700.1

      UniProtKB/Swiss-Prot
      Q2HJH3
      UniProtKB/TrEMBL
      A0AAA9T6I1
      Conserved Domains (1) summary
      pfam08925
      Location:21 → 303
      DUF1907; Domain of Unknown Function (DUF1907)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2HJH3.1 GenPept UniProtKB/Swiss-Prot:Q2HJH3

    Gene LinkOut

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