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    YTHDC1 YTH N6-methyladenosine RNA binding protein C1 [ Bos taurus (domestic cattle) ]

    Gene ID: 613858, updated on 27-Dec-2024

    Summary

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    Official Symbol
    YTHDC1provided by VGNC
    Official Full Name
    YTH N6-methyladenosine RNA binding protein C1provided by VGNC
    Primary source
    VGNC:VGNC:37039
    See related
    BGD:BT19470; Ensembl:ENSBTAG00000015572
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See YTHDC1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (84101772..84139902)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene transmembrane protease, serine 11E Neighboring gene acidic fibroblast growth factor intracellular-binding protein-like Neighboring gene U6 spliceosomal RNA Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene UDP-glucuronosyltransferase 2B15-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137509

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N6-methyladenosine-containing RNA reader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    YTH domain-containing protein 1
    Names
    YTH domain containing 1
    splicing factor YT521-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046520.1 → NP_001039985.1  YTH domain-containing protein 1

      See identical proteins and their annotated locations for NP_001039985.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114069
      UniProtKB/TrEMBL
      A0AAA9T668, Q29RQ7
      Conserved Domains (1) summary
      pfam04146
      Location:356 → 493
      YTH; YT521-B-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      84101772..84139902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005208044.5 → XP_005208101.1  YTH domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005208101.1

      UniProtKB/TrEMBL
      A0AAA9SXG0, A0AAA9T668
      Related
      ENSBTAP00000091152.1, ENSBTAT00000098941.1
      Conserved Domains (1) summary
      cd21134
      Location:357 → 493
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    2. XM_059887639.1 → XP_059743622.1  YTH domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9T668

    3. XM_005208046.5 → XP_005208103.1  YTH domain-containing protein 1 isoform X3

      See identical proteins and their annotated locations for XP_005208103.1

      UniProtKB/TrEMBL
      A0A3Q1MDY9, A0AAA9T668
      Related
      ENSBTAP00000067072.2, ENSBTAT00000075735.2
      Conserved Domains (1) summary
      cd21134
      Location:339 → 475
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    4. XM_005208047.5 → XP_005208104.1  YTH domain-containing protein 1 isoform X4

      See identical proteins and their annotated locations for XP_005208104.1

      UniProtKB/TrEMBL
      F1MIW9
      Related
      ENSBTAP00000020694.6, ENSBTAT00000020694.7
      Conserved Domains (1) summary
      cd21134
      Location:339 → 475
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    5. XM_005208048.5 → XP_005208105.1  YTH domain-containing protein 1 isoform X6

      See identical proteins and their annotated locations for XP_005208105.1

      UniProtKB/TrEMBL
      A0AAA9T668
      Conserved Domains (1) summary
      cd21134
      Location:288 → 424
      YTH; YTH (YT521-B homology) domains are RNA-binding domains that belong to the PUA superfamily

    6. XM_024993406.2 → XP_024849174.1  YTH domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0AAA9T668
      Conserved Domains (1) summary
      pfam04146
      Location:269 → 407
      YTH; YT521-B-like domain

    7. XM_059887640.1 → XP_059743623.1  YTH domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0AAA9T668
    Nucleotide Protein Strain
    Heading Accession and Version

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