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    LAMP3 lysosomal associated membrane protein 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 531327, updated on 1-Jan-2025

    Summary

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    Official Symbol
    LAMP3provided by VGNC
    Official Full Name
    lysosomal associated membrane protein 3provided by VGNC
    Primary source
    VGNC:VGNC:30777
    See related
    BGD:BT26717; Ensembl:ENSBTAG00000006552
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See LAMP3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (83922240..83953897)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene lactate dehydrogenase B pseudogene Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 Neighboring gene methylcrotonyl-CoA carboxylase subunit 1 Neighboring gene defective in cullin neddylation 1 domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC148379

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in establishment of protein localization to organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysosome-associated membrane glycoprotein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102135.1 → NP_001095605.1  lysosome-associated membrane glycoprotein 3

      See identical proteins and their annotated locations for NP_001095605.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151598
      UniProtKB/TrEMBL
      A0A3Q1LKJ0, A7MBJ8
      Related
      ENSBTAP00000008608.5, ENSBTAT00000008608.6
      Conserved Domains (2) summary
      pfam05086
      Location:133 → 279
      Dicty_REP; Dictyostelium (Slime Mold) REP protein
      pfam01299
      Location:129 → 433
      Lamp; Lysosome-associated membrane glycoprotein (Lamp)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      83922240..83953897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005201596.5 → XP_005201653.1  lysosome-associated membrane glycoprotein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LKJ0, A0A3Q1MAV1
      Related
      ENSBTAP00000065742.2, ENSBTAT00000072147.2
      Conserved Domains (2) summary
      pfam05086
      Location:133 → 279
      Dicty_REP; Dictyostelium (Slime Mold) REP protein
      pfam01299
      Location:129 → 431
      Lamp; Lysosome-associated membrane glycoprotein (Lamp)
    Nucleotide Protein Strain
    Heading Accession and Version

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