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    LY9 lymphocyte antigen 9 [ Bos taurus (domestic cattle) ]

    Gene ID: 528926, updated on 27-Dec-2024

    Summary

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    Official Symbol
    LY9provided by VGNC
    Official Full Name
    lymphocyte antigen 9provided by VGNC
    Primary source
    VGNC:VGNC:31094
    See related
    BGD:BT15385; Ensembl:ENSBTAG00000002947
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See LY9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (8760787..8788241, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene intelectin-1-like Neighboring gene poly(A) binding protein interacting protein 1 pseudogene Neighboring gene CD244 molecule Neighboring gene SLAM family member 9 Neighboring gene microRNA mir-11983 Neighboring gene nucleolin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139478

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in T cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-lymphocyte surface antigen Ly-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075918.1 → NP_001069386.1  T-lymphocyte surface antigen Ly-9

      See identical proteins and their annotated locations for NP_001069386.1

      Status: PROVISIONAL

      Source sequence(s)
      BC118207
      UniProtKB/TrEMBL
      Q148K3
      Related
      ENSBTAP00000003840.5, ENSBTAT00000003840.6
      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      8760787..8788241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005203515.5 → XP_005203572.1  T-lymphocyte surface antigen Ly-9 isoform X9

      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    2. XM_005203514.5 → XP_005203571.1  T-lymphocyte surface antigen Ly-9 isoform X7

      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    3. XM_024989409.2 → XP_024845177.1  T-lymphocyte surface antigen Ly-9 isoform X8

      Conserved Domains (2) summary
      pfam13927
      Location:155 → 224
      Ig_3; Immunoglobulin domain
      cd16842
      Location:57 → 149
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

    4. XM_010802768.4 → XP_010801070.1  T-lymphocyte surface antigen Ly-9 isoform X6

      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    5. XM_005203513.5 → XP_005203570.1  T-lymphocyte surface antigen Ly-9 isoform X5

      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    6. XM_005203511.5 → XP_005203568.1  T-lymphocyte surface antigen Ly-9 isoform X3

      UniProtKB/TrEMBL
      A0AAA9TPL2
      Related
      ENSBTAP00000100487.1, ENSBTAT00000097680.1
      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    7. XM_005203510.5 → XP_005203567.1  T-lymphocyte surface antigen Ly-9 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MKN9
      Related
      ENSBTAP00000072131.1, ENSBTAT00000083351.2
      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    8. XM_010802767.4 → XP_010801069.1  T-lymphocyte surface antigen Ly-9 isoform X4

      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain

    9. XM_010802766.4 → XP_010801068.1  T-lymphocyte surface antigen Ly-9 isoform X1

      Conserved Domains (2) summary
      cd05775
      Location:257 → 354
      Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like
      pfam13927
      Location:154 → 224
      Ig_3; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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