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    PTPN9 protein tyrosine phosphatase non-receptor type 9 [ Bos taurus (domestic cattle) ]

    Gene ID: 505220, updated on 1-Jan-2025

    Summary

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    Official Symbol
    PTPN9provided by VGNC
    Official Full Name
    protein tyrosine phosphatase non-receptor type 9provided by VGNC
    Primary source
    VGNC:VGNC:33543
    See related
    BGD:BT30141; Ensembl:ENSBTAG00000016984
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PTPN9 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (33305768..33375889)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3 Neighboring gene snurportin 1 Neighboring gene SIN3 transcription regulator family member A Neighboring gene mannosidase alpha class 2C member 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein phosphatase non-receptor type 9
    NP_001178983.2
    XP_010815351.2
    XP_059734946.1
    XP_059734947.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192054.3 → NP_001178983.2  tyrosine-protein phosphatase non-receptor type 9

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000021
      UniProtKB/TrEMBL
      F1N6W1
      Related
      ENSBTAP00000022588.6, ENSBTAT00000022588.6
      Conserved Domains (3) summary
      smart00194
      Location:334 → 605
      PTPc; Protein tyrosine phosphatase, catalytic domain
      smart00516
      Location:122 → 272
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:52 → 100
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33305768..33375889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010817049.4 → XP_010815351.2  tyrosine-protein phosphatase non-receptor type 9 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M7S0, F1N6W1
      Related
      ENSBTAP00000066119.2, ENSBTAT00000067352.2
      Conserved Domains (3) summary
      smart00194
      Location:283 → 554
      PTPc; Protein tyrosine phosphatase, catalytic domain
      smart00516
      Location:71 → 221
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:2 → 49
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain

    2. XM_059878963.1 → XP_059734946.1  tyrosine-protein phosphatase non-receptor type 9 isoform X2

      UniProtKB/TrEMBL
      F1N6W1

    3. XM_059878964.1 → XP_059734947.1  tyrosine-protein phosphatase non-receptor type 9 isoform X2

      UniProtKB/TrEMBL
      F1N6W1
    Nucleotide Protein Strain
    Heading Accession and Version

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