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    FOXP4 forkhead box P4 [ Bos taurus (domestic cattle) ]

    Gene ID: 517805, updated on 30-Jan-2025

    Summary

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    Official Symbol
    FOXP4provided by VGNC
    Official Full Name
    forkhead box P4provided by VGNC
    Primary source
    VGNC:VGNC:29103
    See related
    EnsemblRapid:ENSBTAG00070027282
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See FOXP4 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (15366557..15417429)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101902276 Neighboring gene uncharacterized LOC132343615 Neighboring gene uncharacterized LOC132343616 Neighboring gene uncharacterized LOC112443870 Neighboring gene large ribosomal subunit protein uL16-like Neighboring gene MyoD family inhibitor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein P4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205524.1 → NP_001192453.1  forkhead box protein P4

      See identical proteins and their annotated locations for NP_001192453.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000023
      UniProtKB/TrEMBL
      E1BM52
      Conserved Domains (2) summary
      smart00339
      Location:472 → 544
      FH; FORKHEAD
      pfam16159
      Location:308 → 375
      FOXP-CC; FOXP coiled-coil domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      15366557..15417429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059880340.1 → XP_059736323.1  forkhead box protein P4 isoform X1

      UniProtKB/TrEMBL
      E1BM52

    2. XM_005223436.5 → XP_005223493.1  forkhead box protein P4 isoform X1

      See identical proteins and their annotated locations for XP_005223493.1

      UniProtKB/TrEMBL
      E1BM52
      Related
      ENSBTAP00070036944.1, ENSBTAT00070062008.1
      Conserved Domains (2) summary
      smart00339
      Location:472 → 544
      FH; FORKHEAD
      pfam16159
      Location:308 → 375
      FOXP-CC; FOXP coiled-coil domain

    3. XM_005223441.5 → XP_005223498.1  forkhead box protein P4 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LNC5
      Related
      ENSBTAP00070036918.1, ENSBTAT00070061972.1
      Conserved Domains (2) summary
      smart00339
      Location:460 → 532
      FH; FORKHEAD
      pfam16159
      Location:308 → 375
      FOXP-CC; FOXP coiled-coil domain

    4. XM_005223438.5 → XP_005223495.1  forkhead box protein P4 isoform X2

      Conserved Domains (2) summary
      pfam00250
      Location:471 → 550
      Forkhead; Forkhead domain
      pfam16159
      Location:307 → 374
      FOXP-CC; FOXP coiled-coil domain

    5. XM_005223442.5 → XP_005223499.1  forkhead box protein P4 isoform X5

      See identical proteins and their annotated locations for XP_005223499.1

      Conserved Domains (2) summary
      smart00339
      Location:459 → 531
      FH; FORKHEAD
      pfam16159
      Location:307 → 374
      FOXP-CC; FOXP coiled-coil domain

    6. XM_024983602.2 → XP_024839370.1  forkhead box protein P4 isoform X3

      Conserved Domains (2) summary
      smart00339
      Location:461 → 533
      FH; FORKHEAD
      pfam16159
      Location:297 → 364
      FOXP-CC; FOXP coiled-coil domain
    Nucleotide Protein Strain
    Heading Accession and Version

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