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    CHST1 carbohydrate sulfotransferase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 506932, updated on 1-Jan-2025

    Summary

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    Official Symbol
    CHST1provided by VGNC
    Official Full Name
    carbohydrate sulfotransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:27337
    See related
    BGD:BT12756; Ensembl:ENSBTAG00000003721
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CHST1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (75702158..75720945, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107133190 Neighboring gene large ribosomal subunit protein eL39 Neighboring gene uncharacterized LOC104974324 Neighboring gene uncharacterized LOC107133191 Neighboring gene uncharacterized LOC132342365

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139349

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables keratan sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-acetylglucosamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in keratan sulfate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbohydrate sulfotransferase 1
    Names
    carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
    NP_001077117.1
    XP_005216476.1
    XP_010811102.1
    XP_015330353.1
    XP_024830862.1
    XP_024830864.1
    XP_024830866.1
    XP_024830867.1
    XP_059730597.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083648.1 → NP_001077117.1  carbohydrate sulfotransferase 1 precursor

      See identical proteins and their annotated locations for NP_001077117.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134550
      UniProtKB/TrEMBL
      A4IFE8
      Related
      ENSBTAP00000092583.1, ENSBTAT00000117957.1
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      75702158..75720945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024975099.2 → XP_024830867.1  carbohydrate sulfotransferase 1 isoform X1

      UniProtKB/TrEMBL
      A4IFE8
      Related
      ENSBTAP00000004844.5, ENSBTAT00000004844.7
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    2. XM_024975098.2 → XP_024830866.1  carbohydrate sulfotransferase 1 isoform X1

      UniProtKB/TrEMBL
      A4IFE8
      Related
      ENSBTAP00000083491.1, ENSBTAT00000130326.1
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    3. XM_024975096.2 → XP_024830864.1  carbohydrate sulfotransferase 1 isoform X1

      UniProtKB/TrEMBL
      A4IFE8
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    4. XM_024975094.2 → XP_024830862.1  carbohydrate sulfotransferase 1 isoform X1

      UniProtKB/TrEMBL
      A4IFE8
      Related
      ENSBTAP00000099270.1, ENSBTAT00000111084.1
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    5. XM_015474867.3 → XP_015330353.1  carbohydrate sulfotransferase 1 isoform X1

      UniProtKB/TrEMBL
      A4IFE8
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    6. XM_005216419.5 → XP_005216476.1  carbohydrate sulfotransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_005216476.1

      UniProtKB/TrEMBL
      A4IFE8
      Related
      ENSBTAP00000080786.1, ENSBTAT00000128078.1
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    7. XM_010812800.4 → XP_010811102.1  carbohydrate sulfotransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_010811102.1

      UniProtKB/TrEMBL
      A4IFE8
      Conserved Domains (1) summary
      pfam00685
      Location:200 → 384
      Sulfotransfer_1; Sulfotransferase domain

    8. XM_059874614.1 → XP_059730597.1  carbohydrate sulfotransferase 1 isoform X1

      UniProtKB/TrEMBL
      A4IFE8
    Nucleotide Protein Strain
    Heading Accession and Version

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