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    AP4S1 adaptor related protein complex 4 subunit sigma 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 618267, updated on 27-Dec-2024

    Summary

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    Official Symbol
    AP4S1provided by VGNC
    Official Full Name
    adaptor related protein complex 4 subunit sigma 1provided by VGNC
    Primary source
    VGNC:VGNC:25994
    See related
    BGD:BT18921; Ensembl:ENSBTAG00000017201
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See AP4S1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (41649500..41697665)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS25-like Neighboring gene uncharacterized LOC104975394 Neighboring gene cochlin Neighboring gene striatin 3 Neighboring gene HECT domain E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC132343411 Neighboring gene HEAT repeat containing 5A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC128561

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-4 complex subunit sigma-1
    Names
    AP-4 adapter complex subunit sigma-1
    AP-4 adaptor complex subunit sigma-1
    adapter-related protein complex 4 subunit sigma-1
    adaptor related protein complex 4 sigma 1 subunit
    sigma-1 subunit of AP-4
    sigma-4-adaptin
    sigma4-adaptin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040603.2 → NP_001035693.1  AP-4 complex subunit sigma-1

      See identical proteins and their annotated locations for NP_001035693.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103455
      UniProtKB/Swiss-Prot
      Q3ZBB6
      Related
      ENSBTAP00000060856.1, ENSBTAT00000070758.2
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      41649500..41697665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059879183.1 → XP_059735166.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/Swiss-Prot
      Q3ZBB6

    2. XM_024981955.2 → XP_024837723.1  AP-4 complex subunit sigma-1 isoform X1

      UniProtKB/Swiss-Prot
      Q3ZBB6
      Conserved Domains (1) summary
      cd14832
      Location:3 → 140
      AP4_sigma; AP-4 complex subunit sigma
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZBB6.1 GenPept UniProtKB/Swiss-Prot:Q3ZBB6

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