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    SLC17A6 solute carrier family 17 member 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 100125225, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SLC17A6provided by VGNC
    Official Full Name
    solute carrier family 17 member 6provided by VGNC
    Primary source
    VGNC:VGNC:34701
    See related
    BGD:BT11002; Ensembl:ENSBTAG00000038347
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    VGluT2
    Orthologs
    human mouse all
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    Genomic context

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    See SLC17A6 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (22470998..22512412, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene small VCP interacting protein Neighboring gene growth arrest specific 2 Neighboring gene FA complementation group F Neighboring gene uncharacterized LOC104976236 Neighboring gene anoctamin 5 Neighboring gene neural EGFL like 1 Neighboring gene isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC166269

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-glutamate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables neurotransmitter transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter loading into synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of synapse structure or activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in excitatory synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicular glutamate transporter 2
    Names
    solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103110.1 → NP_001096580.1  vesicular glutamate transporter 2

      See identical proteins and their annotated locations for NP_001096580.1

      Status: PROVISIONAL

      Source sequence(s)
      BC147973
      UniProtKB/Swiss-Prot
      A6QLI1
      Related
      ENSBTAP00000007935.5, ENSBTAT00000007935.6
      Conserved Domains (1) summary
      cl27298
      Location:70 → 511
      UhpC; Sugar phosphate permease [Carbohydrate transport and metabolism]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22470998..22512412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024986943.2 → XP_024842711.1  vesicular glutamate transporter 2 isoform X1

      UniProtKB/Swiss-Prot
      A6QLI1
      Conserved Domains (1) summary
      cl27298
      Location:70 → 511
      UhpC; Sugar phosphate permease [Carbohydrate transport and metabolism]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QLI1.1 GenPept UniProtKB/Swiss-Prot:A6QLI1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.