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    CHST11 carbohydrate sulfotransferase 11 [ Bos taurus (domestic cattle) ]

    Gene ID: 528860, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CHST11provided by VGNC
    Official Full Name
    carbohydrate sulfotransferase 11provided by VGNC
    Primary source
    VGNC:VGNC:27339
    See related
    BGD:BT14713; Ensembl:ENSBTAG00000010644
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CHST11 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (68004486..68309654)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL6-like Neighboring gene thioredoxin reductase 1 Neighboring gene EP300 interacting inhibitor of differentiation 3 Neighboring gene uncharacterized LOC112446720 Neighboring gene solute carrier family 41 member 2 Neighboring gene NOP protein chaperone 1 Neighboring gene aldehyde dehydrogenase 1 family member L2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbohydrate sulfotransferase 11
    NP_001179597.1
    XP_005206687.1
    XP_005206688.1
    XP_005206689.1
    XP_059742473.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192668.3 → NP_001179597.1  carbohydrate sulfotransferase 11

      See identical proteins and their annotated locations for NP_001179597.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      A0AAA9SU34
      Conserved Domains (1) summary
      pfam03567
      Location:113 → 343
      Sulfotransfer_2; Sulfotransferase family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      68004486..68309654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886490.1 → XP_059742473.1  carbohydrate sulfotransferase 11 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SU34

    2. XM_005206630.5 → XP_005206687.1  carbohydrate sulfotransferase 11 isoform X1

      See identical proteins and their annotated locations for XP_005206687.1

      UniProtKB/TrEMBL
      A0AAA9SU34
      Conserved Domains (1) summary
      pfam03567
      Location:123 → 353
      Sulfotransfer_2; Sulfotransferase family

    3. XM_005206631.5 → XP_005206688.1  carbohydrate sulfotransferase 11 isoform X2

      See identical proteins and their annotated locations for XP_005206688.1

      UniProtKB/TrEMBL
      A0AAA9SU34, A0AAA9TI32
      Related
      ENSBTAP00000095864.1, ENSBTAT00000103980.1
      Conserved Domains (1) summary
      pfam03567
      Location:118 → 348
      Sulfotransfer_2; Sulfotransferase family

    4. XM_005206632.5 → XP_005206689.1  carbohydrate sulfotransferase 11 isoform X3

      See identical proteins and their annotated locations for XP_005206689.1

      UniProtKB/TrEMBL
      A0AAA9SU34
      Conserved Domains (1) summary
      pfam03567
      Location:108 → 338
      Sulfotransfer_2; Sulfotransferase family
    Nucleotide Protein Strain
    Heading Accession and Version

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