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    HNRNPF heterogeneous nuclear ribonucleoprotein F [ Bos taurus (domestic cattle) ]

    Gene ID: 506917, updated on 1-Jan-2025

    Summary

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    Gene symbol
    HNRNPF
    Gene description
    heterogeneous nuclear ribonucleoprotein F
    See related
    BGD:BT17616; Ensembl:ENSBTAG00000008853
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    HNRPF
    Orthologs
    human mouse all
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    Genomic context

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    See HNRNPF in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (13803800..13822395, complement)

    Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344126 Neighboring gene FXYD domain containing ion transport regulator 4 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene BicC family RNA binding protein 1 Neighboring gene transfer RNA cysteine (anticodon ACA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein F
    Names
    hnRNP F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014860.3 → NP_001014860.1  heterogeneous nuclear ribonucleoprotein F

      See identical proteins and their annotated locations for NP_001014860.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102955
      UniProtKB/Swiss-Prot
      Q5E9J1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      13803800..13822395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005226250.5 → XP_005226307.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      See identical proteins and their annotated locations for XP_005226307.1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000099480.1, ENSBTAT00000129153.1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    2. XM_059882477.1 → XP_059738460.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    3. XM_024986619.2 → XP_024842387.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    4. XM_059882471.1 → XP_059738454.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000011658.4, ENSBTAT00000011658.6

    5. XM_059882476.1 → XP_059738459.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    6. XM_005226247.5 → XP_005226304.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      See identical proteins and their annotated locations for XP_005226304.1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000094894.1, ENSBTAT00000134904.1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    7. XM_005226249.5 → XP_005226306.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      See identical proteins and their annotated locations for XP_005226306.1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    8. XM_059882467.1 → XP_059738450.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000096821.1, ENSBTAT00000115241.1

    9. XM_005226246.5 → XP_005226303.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      See identical proteins and their annotated locations for XP_005226303.1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    10. XM_059882473.1 → XP_059738456.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    11. XM_024986617.2 → XP_024842385.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000083320.1, ENSBTAT00000119826.1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    12. XM_059882475.1 → XP_059738458.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    13. XM_059882470.1 → XP_059738453.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000094641.1, ENSBTAT00000133158.1

    14. XM_010820455.4 → XP_010818757.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      See identical proteins and their annotated locations for XP_010818757.1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    15. XM_024986616.2 → XP_024842384.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins

    16. XM_059882472.1 → XP_059738455.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    17. XM_059882469.1 → XP_059738452.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    18. XM_059882474.1 → XP_059738457.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    19. XM_059882468.1 → XP_059738451.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      UniProtKB/Swiss-Prot
      Q5E9J1

    20. XM_005226252.5 → XP_005226309.1  heterogeneous nuclear ribonucleoprotein F isoform X1

      See identical proteins and their annotated locations for XP_005226309.1

      UniProtKB/Swiss-Prot
      Q5E9J1
      Related
      ENSBTAP00000102749.1, ENSBTAT00000109928.1
      Conserved Domains (4) summary
      pfam08080
      Location:255 → 290
      zf-RNPHF; RNPHF zinc finger
      cd12506
      Location:289 → 363
      RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 (RRM3) found in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
      cd12729
      Location:10 → 88
      RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
      cd12731
      Location:103 → 192
      RRM2_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP H, hnRNP H2, hnRNP F and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9J1.3 GenPept UniProtKB/Swiss-Prot:Q5E9J1

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