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    RRP7 ribosomal RNA processing 7 homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 512692, updated on 27-Dec-2024

    Summary

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    Official Symbol
    RRP7provided by VGNC
    Official Full Name
    ribosomal RNA processing 7 homologprovided by VGNC
    Primary source
    VGNC:VGNC:96875
    See related
    BGD:BT29530; Ensembl:ENSBTAG00000016510
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    RRP7A
    Orthologs
    human mouse all
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    Genomic context

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    See RRP7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (113436153..113444149, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene NFAT activating protein with ITAM motif 1 Neighboring gene uncharacterized LOC132345363 Neighboring gene serine hydrolase like 2 Neighboring gene DNA polymerase delta interacting protein 3 Neighboring gene U12 minor spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC133533

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CURI complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of UTP-C complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA-processing protein 7 homolog A
    Names
    ribosomal RNA processing 7 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110074.1 → NP_001103544.1  ribosomal RNA-processing protein 7 homolog A

      See identical proteins and their annotated locations for NP_001103544.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108161
      UniProtKB/TrEMBL
      A0A3S5ZP77, A8YXZ6, F1N384
      Related
      ENSBTAP00000078238.1, ENSBTAT00000133498.1
      Conserved Domains (1) summary
      cd12294
      Location:59 → 159
      RRM_Rrp7A; RNA recognition motif in ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      113436153..113444149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207387.4 → XP_005207444.1  ribosomal RNA-processing protein 7 homolog A isoform X1

      UniProtKB/TrEMBL
      A0A3Q1N7N8
      Related
      ENSBTAP00000066804.2, ENSBTAT00000074559.2
      Conserved Domains (2) summary
      cd12951
      Location:151 → 280
      RRP7_Rrp7A; RRP7 domain ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins
      cd12294
      Location:59 → 159
      RRM_Rrp7A; RNA recognition motif in ribosomal RNA-processing protein 7 homolog A (Rrp7A) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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