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    PHACTR1 phosphatase and actin regulator 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 537594, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PHACTR1provided by VGNC
    Official Full Name
    phosphatase and actin regulator 1provided by VGNC
    Primary source
    VGNC:VGNC:32804
    See related
    BGD:BT16222; Ensembl:ENSBTAG00000012039
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PHACTR1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (43274308..43802987, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343653 Neighboring gene glucose-fructose oxidoreductase domain containing 1 Neighboring gene TBC1 domain family member 7 Neighboring gene uncharacterized LOC132343654 Neighboring gene uncharacterized LOC132343655 Neighboring gene endothelin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell motility IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in stress fiber assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatase and actin regulator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192911.2 → NP_001179840.1  phosphatase and actin regulator 1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000023
      UniProtKB/TrEMBL
      A0A3Q1LFL0, G3N373
      Related
      ENSBTAP00000056982.2, ENSBTAT00000086474.2
      Conserved Domains (2) summary
      smart00707
      Location:462 → 486
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:139 → 161
      RPEL; RPEL repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      43274308..43802987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059880401.1 → XP_059736384.1  phosphatase and actin regulator 1 isoform X3

      UniProtKB/TrEMBL
      G3N373

    2. XM_024983670.2 → XP_024839438.1  phosphatase and actin regulator 1 isoform X3

      UniProtKB/TrEMBL
      G3N373
      Related
      ENSBTAP00000056347.3, ENSBTAT00000064101.3
      Conserved Domains (2) summary
      smart00707
      Location:531 → 555
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:139 → 161
      RPEL; RPEL repeat

    3. XM_024983671.2 → XP_024839439.1  phosphatase and actin regulator 1 isoform X3

      UniProtKB/TrEMBL
      G3N373
      Conserved Domains (2) summary
      smart00707
      Location:531 → 555
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:139 → 161
      RPEL; RPEL repeat

    4. XM_024983673.2 → XP_024839441.1  phosphatase and actin regulator 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LFL0, G3N373
      Conserved Domains (2) summary
      smart00707
      Location:462 → 486
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:139 → 161
      RPEL; RPEL repeat

    5. XM_059880402.1 → XP_059736385.1  phosphatase and actin regulator 1 isoform X3

      UniProtKB/TrEMBL
      G3N373

    6. XM_059880404.1 → XP_059736387.1  phosphatase and actin regulator 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LFL0, G3N373

    7. XM_024983675.2 → XP_024839443.1  phosphatase and actin regulator 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LPU4
      Conserved Domains (2) summary
      smart00707
      Location:439 → 463
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:47 → 69
      RPEL; RPEL repeat

    8. XM_024983674.2 → XP_024839442.1  phosphatase and actin regulator 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LPU4
      Conserved Domains (2) summary
      smart00707
      Location:439 → 463
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:47 → 69
      RPEL; RPEL repeat

    9. XM_059880400.1 → XP_059736383.1  phosphatase and actin regulator 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LPU4

    10. XM_059880403.1 → XP_059736386.1  phosphatase and actin regulator 1 isoform X4

      UniProtKB/TrEMBL
      F1N0D8
      Related
      ENSBTAP00000035281.6, ENSBTAT00000035406.6

    11. XM_024983669.2 → XP_024839437.1  phosphatase and actin regulator 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LPU4
      Related
      ENSBTAP00000059028.2, ENSBTAT00000081911.2
      Conserved Domains (2) summary
      smart00707
      Location:532 → 556
      RPEL; Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2
      pfam02755
      Location:140 → 162
      RPEL; RPEL repeat
    Nucleotide Protein Strain
    Heading Accession and Version

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