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    SCYL2 SCY1 like pseudokinase 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 782059, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SCYL2provided by VGNC
    Official Full Name
    SCY1 like pseudokinase 2provided by VGNC
    Primary source
    VGNC:VGNC:34375
    See related
    EnsemblRapid:ENSBTAG00070018584
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SCYL2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (64220353..64277590)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene bridge-like lipid transfer protein family member 3B Neighboring gene actin related protein 6 Neighboring gene solute carrier family 17 member 8 Neighboring gene nuclear receptor subfamily 1 group H member 4 Neighboring gene uncharacterized LOC132345305

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC138084

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SCY1-like protein 2
    Names
    SCY1-like 2
    coated vesicle-associated kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102529.1 → NP_001095999.1  SCY1-like protein 2

      See identical proteins and their annotated locations for NP_001095999.1

      Status: PROVISIONAL

      Source sequence(s)
      BC148032
      UniProtKB/TrEMBL
      A0AAA9RWX2, A6QLN8, F1MID0
      Related
      ENSBTAP00070025077.1, ENSBTAT00070042044.1
      Conserved Domains (3) summary
      smart00220
      Location:32 → 327
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14011
      Location:38 → 329
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:373 → 403
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      64220353..64277590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024992299.2 → XP_024848067.1  SCY1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0AAA9RWX2, A0AAA9TPI7
      Related
      ENSBTAP00070025057.1, ENSBTAT00070042003.1
      Conserved Domains (3) summary
      cd14011
      Location:38 → 329
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:373 → 403
      HEAT; HEAT repeat [structural motif]
      pfam09606
      Location:734 → 870
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    2. XM_024992298.2 → XP_024848066.1  SCY1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RWX2
      Related
      ENSBTAP00070025067.1, ENSBTAT00070042024.1
      Conserved Domains (4) summary
      cd14011
      Location:38 → 329
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:373 → 403
      HEAT; HEAT repeat [structural motif]
      pfam09606
      Location:773 → 909
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl25732
      Location:580 → 698
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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